Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g0757 ATGCAAGCAGCTCAAGCTTCAGCCACTGATGAAGCTCCTGAGATTTCCCATCAGGCTGTCCCCCAGCGAAACAAAGAAGTTTCAGATAGTGGACCCAGTAGTAGGCGCCCTGATATATCACTTCAAGTTCCCCCTAGACCTATAGGGTTTGGCGGCACTAGTGGTGGAAGGGTTCTGAACCATTCTCAAAGTTTCACTAAAGGGATTTCATCATCAAAAAGCATCTTGAGGGCCTTGAGcttcaaaagaaaaggaaatgtaGCAGATGGCGAAAGAAGTTGCCTCCTTAATTCAGACCCCAAGACAGCTGCAGACGGTCCTAATATGGCATCCATATCTGAAATTGCATGGAAAAGATGCACTTCTCTTCCTGTTACACCTGCATCAAATCTGTCTCCTTCAGTTTCTACCCCCATTTCTGCAAGGACATATAATGAACAGACTAAGCCGCATAAAGAGGTTGATCGTTCTATGGTTTCAAGGTCCCTTTCTGTACCCGGACGAAATGTTGTTATTGTAAGGTCTGTCTCTTTTTCTACCCGTAGTGAACAGGAGCAACAAGATCTAAATGATGATCAAATTACTCCTGTGCCAGTAGAAGTTACTGCCGATGAAGAAATTCCTGAAGAGGAAGCAGTATGCAGGATATGTTTTGATGTGTGTGATGAAAGGAATACCTTAAAAATGGAATGCAGTTGCAAGGGTGACCTGAGATTGGTGCATGAAGAATGTGCAATTAAATGGTTTAGCACGAAAGGAGATAAGAAATGTGATGTATGTAGGCAAGAGGTTCAGAATTTACCTGTAACTTTACTTCGTGTGACCAGCTCTGTTCAACGACAAAACAGACAGCTGCAAGGTCAGCAGAACCTACATCCGGAGTCAATAAGCGCTTGGCAAGACTTCGTGGTGCTTGTCCTGATCAGCACGATATGCTACTTTTTCTTCATTGAGCAGCTACTGCTTCCTGAAATGAAGACTCAAGCGATTATTATAGCGGCACCATTTGCCTTTACCTTGGGCCTCCTAGCTTCTATTTTTGCAGTCGTCCTGGCTATTAAAGAGTATATATGGACATATGCTGCTCTTGAGTTTGCCCTTGTTGCTTTAACCGTGCATCTATTTTATACTATGTTGCATTTGACGGCCATATATGCAATACTACTTTCATCAGTTTTGGGTTTTGGAATTGCTATGGGCATCAACTACGCATATATCCAGTTTGTCACTTGGAGACTTCAGGTCTCTCATGATGATAACCCAGTATGA 1269 0.4255 MQAAQASATDEAPEISHQAVPQRNKEVSDSGPSSRRPDISLQVPPRPIGFGGTSGGRVLNHSQSFTKGISSSKSILRALSFKRKGNVADGERSCLLNSDPKTAADGPNMASISEIAWKRCTSLPVTPASNLSPSVSTPISARTYNEQTKPHKEVDRSMVSRSLSVPGRNVVIVRSVSFSTRSEQEQQDLNDDQITPVPVEVTADEEIPEEEAVCRICFDVCDERNTLKMECSCKGDLRLVHEECAIKWFSTKGDKKCDVCRQEVQNLPVTLLRVTSSVQRQNRQLQGQQNLHPESISAWQDFVVLVLISTICYFFFIEQLLLPEMKTQAIIIAAPFAFTLGLLASIFAVVLAIKEYIWTYAALEFALVALTVHLFYTMLHLTAIYAILLSSVLGFGIAMGINYAYIQFVTWRLQVSHDDNPV 422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g0757 422 PANTHER OS02G0165000 PROTEIN 1 422 - -
Ssu1g0757 422 SUPERFAMILY RING/U-box 210 264 - -
Ssu1g0757 422 MobiDBLite consensus disorder prediction 1 62 - -
Ssu1g0757 422 MobiDBLite consensus disorder prediction 127 145 - -
Ssu1g0757 422 PANTHER ZINC FINGER PROTEIN 1 422 - -
Ssu1g0757 422 SMART ringv_2 213 261 IPR011016 GO:0008270
Ssu1g0757 422 MobiDBLite consensus disorder prediction 127 158 - -
Ssu1g0757 422 ProSiteProfiles Zinc finger RING-CH-type profile. 206 267 IPR011016 GO:0008270
Ssu1g0757 422 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 200 269 IPR013083 -
Ssu1g0757 422 ProSiteProfiles Zinc finger RING-type profile. 214 261 IPR001841 -
Ssu1g0757 422 MobiDBLite consensus disorder prediction 21 37 - -
Ssu1g0757 422 Pfam RING-variant domain 214 260 IPR011016 GO:0008270
Ssu1g0757 422 CDD RING_CH-C4HC3_MARCH 214 261 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g0757 Ssu-Chr1 16598082 16604016 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g0757 156 321 C3H Transcription Factor Family AT2G37950 27.717 1.64e-11 61.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g0757 - - gmx:100527094 776.548
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g0757 1 16598082 16604016 Ssu1g0757 1 16598082 16604016 ECH