Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g0754 ATGGAGTGCAATAAAGAAGAGGCCTTAAGGGCCAAGGACATTGCTGAAAAGAAAATGCTAAACAAGGATTTCAATGGGGCTCGAAAAATTGCTCTTAAGGCTCAGCAGCTATATCCAGATTTGGAGAATATCACTCAGATGCTTATTGTTTGTGATGTGCATTGCTCTGCTGAGCAGAGATTGTTTGGCAATGAGATGGACTGgtataaaattcttcaaattgagCTGACGGCTAATGATACAACAATTAAGAAGCAATACAGGAAGTTTGCTCTCCAACTTCATCCTGACAAAAACAAGTTTGCTGGTGCAGAAGCTGCATTTAAGCTGATTGGGGAAGCTCAAAGAGTTCTTTTGGATAGAGAAAAACGATCTAGGCTTGACATGAATTTGCGCAGGGTTCCAATGAACAGAACTACCATGCCATCTCATCATCATCAGAATGTTAAGATGAATTTTAATCCTGTGATGCAAACCAGTGTCAGGCCCAATTTTACAAACTTAAATCCTCAGCAGCAACAACAGACTAGGCAGCCATCTCAGCAGGGGCCTAATGGTGGCCGCCCTACATTTTGGACAGTTTGCTCATTTTGTTCTGTTAGATATGAGTATTATAGGGAAGTTTTAAACAGATCTCTTCGCTGTCAAAATTGCAGTAGGCCATTCATTGCATATGATGTGGATGTGCAAGGTACAACACCGGCAACTAATTCAAGTCAGCAAGCTTTTGGTGCACAGAACTATAGTCAGAATCATGGTGCTTTCAAGGTTGGTGTTGGATCTCAAGGTAATTTGCATCCTCACAGGTCCAATACAGAATCATATCAGAAAAAAAGTCCTACTGCTGATGTCTCTGTGAAGCCAAAtggaaagagaaggagaaagcgGGTAAGAGAATCCAGTGAAAGTTCTGAATCTGTGGGCAGCACTGATTCTGAATCTGAAGAGGATATGCTTTATGACAAGGATGGTTTTCCTGGTGTTTCTACTCACAGAGAAGAGAATCCACGTAGATCTACGCGGCAAAAGCATCAGGTTTCCTACAAGGAGAATGTGAGTGACGATGATGAAGGGAATGGATCTCCATCTGGTGTTGGTGAAAATCGTGGGGAGGCAGCTAAAATGAATGAACAGAATGGTTTGGGTGCTGATCTGAAAGGTGATCAACAAGGGgtaaagaaaaagcaaaactTTTATTCTGAAGAGaacttacaaaatataaatgaggAAATTAATGAGGTGAGAGGAAAAGAGGCAGTGGGTAGCTCAAAGATAGACAAGGCTTCAGAGCATTCAACCTCAAAATCAACAGATCAACcagataattttgtttatccAGATGCAGAGTTCAGCGACTTTGACAAGGACAAGAAAGAGGGGTCTTTTGCTGCTGGGCAGATTTGGGCTATTTATGATACTACAGATGGTATGCCTAGATTCTATGCTTTAATCAGAAAAGTTCTCTCTCCTGGATTCAAGTTGCGGATAACATGGTTTGAACCAGATCCGGATGAGTACGATGAAGTCCACTGGTTAAATGAGCAATTGCCAGTTGCTTGTGGGAAACATAAACTTGGTAGCACTGAAACCACTGAAGATCGTCTGATGTTCTCTCATCTGATTTTTTGCGAAAAGATTGGCCGCAGTAGTTATAAAGTATATCCTAGAAAGGGAGAAACTTGGgctctttttaaaaattgggatATCAAATGGCATATGGATGCGGAGTCTCATCGGCAGtatgattttgaatttgttgaaatcTTGTCAGATTATGTTGAAGGTGTGGGAGTAGTTGTTGCATACTTGGCTAAGTTGAAAGGTTTTGTCAGTCTCTTCTCTCGAATGGAGGGAGGTAATCGCACATTTCAAATTCCATCAGTTGAGTTATTCAGATTCTCTCACAGGGTTCCATCTTTTAAAATGACTGGTCAGGAAAGAGTTGGTGTTCCTGTAGGATCTTATGAACTTGATCCTGTATCCTTGCCAATGATTCTTGAAGAGATTGCTGTTCCTGAAGATTTGGGAGTAAAGGTTGGTCATTGTCCATATAGTGGGATGGGCACAAGGTCTGCGGATATGTCAAAATTCATGATGAACTCAGAGGGAGATGCATCTACTGCAAAGGTTAATTTGGAAAGCAGTAATTCAGCAGAGGAGAACAAGGATCCTGTTGATCATATTGGTAATGGTAGTGCTCAATCAGCTTCAGCAGCAGATGCTTTTGAAATTCCAGATCCCGTGTTCTGCAATTTTGATGCTGGGAGGTCCCTTGAAAAGTTTCAGATTGGTCAAATTTGGGCATTTTACGGGGATGAGGATGGACTGCCAAAATACTATGGTCAGGTCAAGAGGGTTAGGACTAGCCCAGATCTTGAGTTGCAAGTTACATATCTTACTAACTGCTGGCTACCAGAGAACAGTCTTAGATGGGAGGATAAGGATATGCTTATTTCCATTGGaagatttaaaatcaaaacaggTGCTCGTCCCTGCATTTATACTAACACCTATTCTGTTTCACATCAGGTGCAGGCTATTACTGATGGTGGTAAGAAGAAGGAATATGAAATTTTTCCAAGGAAAGGCGAAATTTGGGCATTGTATAAGAATTGGACGACTAAAATAAAACGTTCTGATTTGGAAAACTGGGAGTATGACATAGTGGAAGTTATTGGAGAAAATGATTTGTGGATGGATGTTTTACCTTTGGAGTTGGTTAGTGGTTATAATTCAGTTTTTAAGGGCAAATCAAATGAAGGATCAGCTAGGACCATGAAAATATACTGGAAAGAGTTGCTCAGGTTCTCTCACCAAATCCCTGCCTTCAAACTGACAGAAAAACATGGTGGCAATCTGAGAGGCTTCTGGGAACTTGATCCGGGAGCACTACCCCTTCATTATTTTAACAACAAATAA 2919 0.3926 MECNKEEALRAKDIAEKKMLNKDFNGARKIALKAQQLYPDLENITQMLIVCDVHCSAEQRLFGNEMDWYKILQIELTANDTTIKKQYRKFALQLHPDKNKFAGAEAAFKLIGEAQRVLLDREKRSRLDMNLRRVPMNRTTMPSHHHQNVKMNFNPVMQTSVRPNFTNLNPQQQQQTRQPSQQGPNGGRPTFWTVCSFCSVRYEYYREVLNRSLRCQNCSRPFIAYDVDVQGTTPATNSSQQAFGAQNYSQNHGAFKVGVGSQGNLHPHRSNTESYQKKSPTADVSVKPNGKRRRKRVRESSESSESVGSTDSESEEDMLYDKDGFPGVSTHREENPRRSTRQKHQVSYKENVSDDDEGNGSPSGVGENRGEAAKMNEQNGLGADLKGDQQGVKKKQNFYSEENLQNINEEINEVRGKEAVGSSKIDKASEHSTSKSTDQPDNFVYPDAEFSDFDKDKKEGSFAAGQIWAIYDTTDGMPRFYALIRKVLSPGFKLRITWFEPDPDEYDEVHWLNEQLPVACGKHKLGSTETTEDRLMFSHLIFCEKIGRSSYKVYPRKGETWALFKNWDIKWHMDAESHRQYDFEFVEILSDYVEGVGVVVAYLAKLKGFVSLFSRMEGGNRTFQIPSVELFRFSHRVPSFKMTGQERVGVPVGSYELDPVSLPMILEEIAVPEDLGVKVGHCPYSGMGTRSADMSKFMMNSEGDASTAKVNLESSNSAEENKDPVDHIGNGSAQSASAADAFEIPDPVFCNFDAGRSLEKFQIGQIWAFYGDEDGLPKYYGQVKRVRTSPDLELQVTYLTNCWLPENSLRWEDKDMLISIGRFKIKTGARPCIYTNTYSVSHQVQAITDGGKKKEYEIFPRKGEIWALYKNWTTKIKRSDLENWEYDIVEVIGENDLWMDVLPLELVSGYNSVFKGKSNEGSARTMKIYWKELLRFSHQIPAFKLTEKHGGNLRGFWELDPGALPLHYFNNK 972
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g0754 972 PANTHER - 1 970 - -
Ssu1g0754 972 MobiDBLite consensus disorder prediction 319 356 - -
Ssu1g0754 972 MobiDBLite consensus disorder prediction 409 444 - -
Ssu1g0754 972 MobiDBLite consensus disorder prediction 708 732 - -
Ssu1g0754 972 MobiDBLite consensus disorder prediction 160 186 - -
Ssu1g0754 972 CDD DnaJ 67 120 IPR001623 -
Ssu1g0754 972 Gene3D DnaJ domain 64 180 IPR036869 -
Ssu1g0754 972 SUPERFAMILY Chaperone J-domain 64 141 IPR036869 -
Ssu1g0754 972 MobiDBLite consensus disorder prediction 411 434 - -
Ssu1g0754 972 Pfam Domain of unknown function (DUF3444) 741 948 IPR024593 -
Ssu1g0754 972 Pfam Domain of unknown function (DUF3444) 441 646 IPR024593 -
Ssu1g0754 972 PANTHER DNAJ HEAT SHOCK AMINO-TERMINAL DOMAIN PROTEIN 1 970 - -
Ssu1g0754 972 MobiDBLite consensus disorder prediction 254 370 - -
Ssu1g0754 972 ProSiteProfiles dnaJ domain profile. 67 131 IPR001623 -
Ssu1g0754 972 SMART dnaj_3 66 123 IPR001623 -
Ssu1g0754 972 MobiDBLite consensus disorder prediction 264 283 - -
Ssu1g0754 972 Pfam DnaJ domain 67 128 IPR001623 -
Ssu1g0754 972 PRINTS DnaJ domain signature 87 102 IPR001623 -
Ssu1g0754 972 PRINTS DnaJ domain signature 69 87 IPR001623 -
Ssu1g0754 972 PRINTS DnaJ domain signature 103 123 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g0754 Ssu-Chr1 16563835 16566753 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g0754 4 227 SUVH1 or 3-interacting DNAJ domain-containing protein superfamily AT2G01710 35.622 6.06e-31 123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g0754 - - gmx:100779228 1699.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g0754 1 16563835 16566753 Ssu1g0754 1 16563835 16566753 ECH
Ssu6g0272 6 4306172 4309081 Ssu1g0754 1 16563835 16566753 PCT