Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g0753 ATGCACACGCAGACCGTTTACAAAGGCAGGAAGAAGAAGACCATCGAGTATTTCGCCATCAAAAGCGTCGACAAATCGCAGAAAACCAAGGTCCTCGAAGAAGTCAGGATTCTTCACACATTAGATCATATAAATGTGCTGAAGTTTTATGATTGGTATGAAACTTCTGCTCATCTATGGTTGGTTTTGGAGTACTGTGTCGGAGGGGATCTGCTTTCCATATTACGACAGGATAGTCAACTTCCTGAAGACTCGGTTCATGATCTTGCTTATGATCTTGTCAAAGCTTTGCAGTTTCTACATTCAAATGGAATAATTTATTGTGACCTGAAACCATCAAATATCCTACTAGATGAAAATGGATGTGCAAAGCTATGTGATTTTGGATTGGCTAGGAAGTTGAAAGATATATCAAAAGCTCCTTCTTCCTCATTGCCGCGAGCAAAACGTGGAACGCCCTCTTACATGGCTCCAGAGCTTTTTGAGGATGGTGGAGTCCATTCTTATGCTTCTGATTTCTGGGCCCTAGGCTGTGTACTCTATGAATGTTATGCTGGGAGGCCTCCCTTTGTGGGAAGAGAATTCACTCAGCTTGTAAAATCCATCATTTCAGATCCGACTCCGCCTCTCCCTGGTAATCCAAGTCGACCTTttgtcaatttaattaattctttgttgGTAAAAGACCCAGCCGAAAGAATACAGTGGCCTGAGCTATGTGGACATGCCTTTTGGAGAACCAAATTTACTCTGGTGTCTCTGCCTGCTCAACCTGCATTTGATGATATGATAGAGCTACATGCTAAACCATGCTTATCAGAACGTAATGGAGATAAACCTTTGCATAATAGGACCCCTCCCAAATATCGTGAAAAAGATGTGAAAGGGGTGATGAAGAAGGATGAGAATTCTATTTTAGGCTCCAGAGGCATTGAGACACCAACAAGGGCCACACCAAATGGCCACAGAACCCAGACAAAGGGTTCTGGAAGAACAATTGAGGCAAAACAGAAAGATCCTTCCAATATTAGCAAAGGTGTGAATCTTTTGAGACTGTCAAGAATagcaaaatcaaatttacagaAAGAAAACGAGAAGGAAAACTATCGACGCCCCTTGCCTAATAGCTCCAAGAATGACTCTGAAGTTAAAATTGAGAACACTGACATGGAACTTGATTTTGATGAGAATACTGAAGATGATGCACATGAAGAAACTGTTGGCACTGAACAAGCAACTTCTGTGCCTGATGAGAAAATGGACAATCATTTTCTGAGTCAGGAAAAAGCAGAGGAGATTGAAAATAGTACACACCAGTTGGACACCCCATCTGTTGTTAACCCTCCTACCTCAGATGATCCAAGGTCATTTGATCCTGAATCAACTCCTGACCGTCCCGACATATCTGCTATTTCTCCCAGTGTGAGCCCTCAGGTGAAGAAGCATAGAGCTAAAGAAGACTCAGGATCTGGCCTTGACTCTGATTCTTCAAGGTTGTCTAACAACCTTTCCCAGGTTCTTTGGCATCCATCTGATCTCTCAGTCAGACCTGTAATGCCTAGCAGAAAAGTTGATAAAGTCTCAGAAGTCATTCCTTCACTCCCTTTTGAGGCATTGCAAGCATCTGATTTTGTCAAGATTCCTAAGGAGCAATTGGAGGCAGTCCACAACCGAATATTAGCCATTTTGAATGGGAATACCAGCATTGGAGAGAAACAGAATGTGATTAGGTACCTTGAGATGTTGAGCAGTAATGCTGATGCAGCTAATATATTGACCAATGGGCCAATAATGCTCATGCTTGTAAAATTGCTACGTCAATCCAAGGCATCAGCTTTGCGTGTTCAACTTGCTTCACTGATCGGTCTGTTGATTAGGCACTCCACTTTTGTTGATGACAGTTTGGCTAATTCTGGAATTTTAGGTGCACTGACCGATGGCCTTAGAGACAGGCAGGAAAAGTAA 1965 0.4183 MHTQTVYKGRKKKTIEYFAIKSVDKSQKTKVLEEVRILHTLDHINVLKFYDWYETSAHLWLVLEYCVGGDLLSILRQDSQLPEDSVHDLAYDLVKALQFLHSNGIIYCDLKPSNILLDENGCAKLCDFGLARKLKDISKAPSSSLPRAKRGTPSYMAPELFEDGGVHSYASDFWALGCVLYECYAGRPPFVGREFTQLVKSIISDPTPPLPGNPSRPFVNLINSLLVKDPAERIQWPELCGHAFWRTKFTLVSLPAQPAFDDMIELHAKPCLSERNGDKPLHNRTPPKYREKDVKGVMKKDENSILGSRGIETPTRATPNGHRTQTKGSGRTIEAKQKDPSNISKGVNLLRLSRIAKSNLQKENEKENYRRPLPNSSKNDSEVKIENTDMELDFDENTEDDAHEETVGTEQATSVPDEKMDNHFLSQEKAEEIENSTHQLDTPSVVNPPTSDDPRSFDPESTPDRPDISAISPSVSPQVKKHRAKEDSGSGLDSDSSRLSNNLSQVLWHPSDLSVRPVMPSRKVDKVSEVIPSLPFEALQASDFVKIPKEQLEAVHNRILAILNGNTSIGEKQNVIRYLEMLSSNADAANILTNGPIMLMLVKLLRQSKASALRVQLASLIGLLIRHSTFVDDSLANSGILGALTDGLRDRQEK 654
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g0753 654 Gene3D - 550 654 IPR011989 -
Ssu1g0753 654 Gene3D Transferase(Phosphotransferase) domain 1 2 281 - -
Ssu1g0753 654 MobiDBLite consensus disorder prediction 305 419 - -
Ssu1g0753 654 SUPERFAMILY Protein kinase-like (PK-like) 5 246 IPR011009 -
Ssu1g0753 654 CDD STKc_ULK4 4 245 - -
Ssu1g0753 654 ProSiteProfiles Protein kinase domain profile. 1 245 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu1g0753 654 Pfam Protein kinase domain 5 244 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu1g0753 654 ProSitePatterns Serine/Threonine protein kinases active-site signature. 105 117 IPR008271 GO:0004672|GO:0006468
Ssu1g0753 654 SMART serkin_6 5 245 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu1g0753 654 MobiDBLite consensus disorder prediction 358 373 - -
Ssu1g0753 654 MobiDBLite consensus disorder prediction 308 348 - -
Ssu1g0753 654 PANTHER SERINE/THREONINE-KINASE ULK4-LIKE PROTEIN-RELATED 5 654 IPR044591 GO:0000911|GO:0000914|GO:0008017
Ssu1g0753 654 MobiDBLite consensus disorder prediction 437 456 - -
Ssu1g0753 654 SUPERFAMILY ARM repeat 551 650 IPR016024 -
Ssu1g0753 654 MobiDBLite consensus disorder prediction 432 498 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g0753 Ssu-Chr1 16547349 16550570 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g0753 6 234 AGC Kinase Gene Family AT1G45160 34.749 4.62e-35 140
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK ULK_ULK4 Ssu1g0753 Pkinase 1.3e-60 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g0753 K17545 - gmx:100817590 1200.65