Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g0743 ATGGGCATAATCAGGAGCATTAGATCGAGGTCGCTCCGCGTGGTGCAGGAGCAAGAAGAGTGTGTCGGCGACAGCATGCGACAGAGCTGTTGGGCCAACATGCCCCAGGAGCTCCTCCGCGAGGTGCTCCTCCGAATCGAGGCCTCCGAGGACACGTGGCCGCCGCGCCAGAGCGTCGTCGCCTGCGCCGGCGTCTGCCGCAGCTGGAGACAGATCACCAAAGACATTGTCAAAACACCCGAACTTTCCTCCAAGATTACCTTCCCCATTTCTCTTAAACAGGTTCCTCCACCTCCCCTTTTCACTTGCTTCCTCCTTTGCCTAAAATTTTTCATGGCGCTAGCTGAAGATGGGAAGTTCCTTCTGGCTGCACGCAAATGCAGACGTCCAACCTGCACAGATTATATCATCTCTCTCGATGCAGATGACATGTCAAAGGGAAGCAACACCTATGTTGGGAAACTAAGATCAAATTTTCTTGGAACAAAGTTCACAATCTATGATGGCCAGCCACCTCATGCAGGGGCAAAGATTATGAAAAGCCGATCCACAAGGCTGGTGAATCTAAAACAAGTTTCACCCAAGGTCCCTACAGGCAACTATCCAGTGGCCCACATTTCATATGAATTGAACGTGCTAGGCTCCAGGGGGCCTAGGAGAATGCATTGTGTCATGGATTCCATTCCTGCCTCTGCAATTGAACCAGGGGGGCTGGCCCCTACACAGACCGAGTTTTCTCTTAACAACATAGATATGTTCCCTTCATTCCCCTTTTTTTCGATCAAAATCAAATCGTGTGGATAA 804 0.5075 MGIIRSIRSRSLRVVQEQEECVGDSMRQSCWANMPQELLREVLLRIEASEDTWPPRQSVVACAGVCRSWRQITKDIVKTPELSSKITFPISLKQVPPPPLFTCFLLCLKFFMALAEDGKFLLAARKCRRPTCTDYIISLDADDMSKGSNTYVGKLRSNFLGTKFTIYDGQPPHAGAKIMKSRSTRLVNLKQVSPKVPTGNYPVAHISYELNVLGSRGPRRMHCVMDSIPASAIEPGGLAPTQTEFSLNNIDMFPSFPFFSIKIKSCG 267
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g0743 267 Gene3D Tubby Protein; Chain A 101 253 IPR025659 -
Ssu1g0743 267 PANTHER TUBBY-LIKE F-BOX PROTEIN 3-RELATED 6 262 - -
Ssu1g0743 267 SUPERFAMILY Tubby C-terminal domain-like 80 250 IPR025659 -
Ssu1g0743 267 PANTHER TUBBY-RELATED 6 262 - -
Ssu1g0743 267 Pfam F-box domain 31 78 IPR001810 GO:0005515
Ssu1g0743 267 PRINTS Tubby superfamily signature 135 151 IPR000007 -
Ssu1g0743 267 PRINTS Tubby superfamily signature 151 175 IPR000007 -
Ssu1g0743 267 PRINTS Tubby superfamily signature 200 227 IPR000007 -
Ssu1g0743 267 SUPERFAMILY F-box domain 26 75 IPR036047 GO:0005515
Ssu1g0743 267 Pfam Tub family 107 247 IPR000007 -
Ssu1g0743 267 Gene3D - 24 86 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g0743 Ssu-Chr1 16431509 16434631 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g0743 8 251 TUB Transcription Factor Family AT2G47900 65.370 3.84e-119 345
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Ssu1g0743 Tub 3e-46 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g0743 K19600 - gmx:100815464 447.588
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g0743 1 16431509 16434631 Ssu1g0743 1 16431509 16434631 ECH