Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g0742 ATGGGCATAATCAGGAGCATTAGATCGAGGTCGCTCCGCGTGGTGCAGGAGCAAGAAGAGTGTGTCGGCGACAGCATGCGACAGAGCTGTTGGGCCAACATGCCCCAGGAGCTCCTCCGCGAGGTGCTCCTCCGAATCGAGGCCTCCGAGGACACGTGGCCGCCGCGCCAGAGCGTCGTCGCCTGCGCCGGCGTCTGCCGCAGCTGGAGACAGATCACCAAAGACATTGTCAAAACACCCGAACTTTCCTCCAAGATTACCTTCCCCATTTCTCTTAAACAGCCCGGTCCAAGGGAGAATCTCCTCCGGTGCTTTATAAAGCGCAACCGGTCCACCCAAACATATTATCTGTTTCTCAGTTTAACTAGTACGCTAGCTGAAGATGGGAAGTTCCTTCTGGCTGCACGCAAATGCAGACGTCCAACCTGCACAGATTATATCATCTCTCTCGATGCAGATGACATGTCAAAGGGAAGCAACACCTATGTTGGGAAACTAAGATCAAATTTTCTTGGAACAAAGTTCACAATCTATGATGGCCAGCCACCTCATGCAGGGGCAAAGATTATGAAAAGCCGATCCACAAGGCTGGTGAATCTAAAACAAGTTTCACCCAAGGTCCCTACAGGCAACTATCCAGTGGCCCACATTTCATATGAATTGAACGTGCTAGGCTCCAGGGGGCCTAGGAGAATGCATTGTGTCATGGATTCCATTCCTGCCTCTGCAATTGAACCAGGGGGGCTGGCCCCTACACAGACCGAGTTTTCTCTTAACAACATAGATATGTTCCCTTCATTCCCCTTTTTTCGATCAAAAATCAAATCGTGTGGATAA 837 0.5066 MGIIRSIRSRSLRVVQEQEECVGDSMRQSCWANMPQELLREVLLRIEASEDTWPPRQSVVACAGVCRSWRQITKDIVKTPELSSKITFPISLKQPGPRENLLRCFIKRNRSTQTYYLFLSLTSTLAEDGKFLLAARKCRRPTCTDYIISLDADDMSKGSNTYVGKLRSNFLGTKFTIYDGQPPHAGAKIMKSRSTRLVNLKQVSPKVPTGNYPVAHISYELNVLGSRGPRRMHCVMDSIPASAIEPGGLAPTQTEFSLNNIDMFPSFPFFRSKIKSCG 278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g0742 278 Pfam F-box domain 31 78 IPR001810 GO:0005515
Ssu1g0742 278 PRINTS Tubby superfamily signature 211 238 IPR000007 -
Ssu1g0742 278 PRINTS Tubby superfamily signature 162 186 IPR000007 -
Ssu1g0742 278 PRINTS Tubby superfamily signature 146 162 IPR000007 -
Ssu1g0742 278 PANTHER TUBBY-LIKE F-BOX PROTEIN 3-RELATED 6 274 - -
Ssu1g0742 278 Pfam Tub family 92 258 IPR000007 -
Ssu1g0742 278 Gene3D - 24 84 - -
Ssu1g0742 278 PANTHER TUBBY-RELATED 6 274 - -
Ssu1g0742 278 Gene3D Tubby Protein; Chain A 91 266 IPR025659 -
Ssu1g0742 278 SUPERFAMILY F-box domain 26 75 IPR036047 GO:0005515
Ssu1g0742 278 SUPERFAMILY Tubby C-terminal domain-like 80 261 IPR025659 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g0742 Ssu-Chr1 16399532 16402647 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g0742 8 262 TUB Transcription Factor Family AT2G47900 70.428 1.89e-136 389
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Ssu1g0742 Tub 6.1e-58 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g0742 K19600 - gmx:100815464 512.686