Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g0741 ATGCTGGTGTTGAAAAACAAGGCTCCCAGGTGGCATGAGCAGCTGCAGTGTTGGTGCCTAAACTTTCATGGACGGGTGACAGTTGCCTCGGTTAAAAACTTTCAGCTGGTGGCTTCTGCAGAAAATGGACCAGCTGGACCAGAACATGATAAGATTATCCTCCAGTTTGGAAAAGTTGGGAAGGATTTGTTTACAATGGATTACCAGTACCCTATCTCAGCATTTCAGGCATTTGCAATCTGTCTCAGCAGCTTTGATACCAAGATTGCTTGTGAATGA 279 0.4516 MLVLKNKAPRWHEQLQCWCLNFHGRVTVASVKNFQLVASAENGPAGPEHDKIILQFGKVGKDLFTMDYQYPISAFQAFAICLSSFDTKIACE 92
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g0741 92 PANTHER TUBBY-LIKE F-BOX PROTEIN 9 1 92 - -
Ssu1g0741 92 ProSitePatterns Tub family signature 1. 22 35 IPR018066 -
Ssu1g0741 92 Pfam Tub family 1 87 IPR000007 -
Ssu1g0741 92 SUPERFAMILY Tubby C-terminal domain-like 2 92 IPR025659 -
Ssu1g0741 92 PRINTS Tubby superfamily signature 49 68 IPR000007 -
Ssu1g0741 92 PRINTS Tubby superfamily signature 22 38 IPR000007 -
Ssu1g0741 92 PRINTS Tubby superfamily signature 4 21 IPR000007 -
Ssu1g0741 92 PRINTS Tubby superfamily signature 70 92 IPR000007 -
Ssu1g0741 92 ProSitePatterns Tub family signature 2. 77 92 IPR018066 -
Ssu1g0741 92 Gene3D Tubby Protein; Chain A 1 92 IPR025659 -
Ssu1g0741 92 PANTHER TUBBY-RELATED 1 92 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g0741 Ssu-Chr1 16399216 16399494 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g0741 1 92 TUB Transcription Factor Family AT2G47900 90.217 4.97e-60 186
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Ssu1g0741 Tub 8.2e-51 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g0741 K19600 - gmx:100778346 193.741