Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g0729 ATGGCGAGACCTTCCAAGCCACTGTCATCTTCCGACGAAGCGCTCTCCAATGCTTCGAGTTCGTCCGAGGAAGAGGAGCAGGCAAACGAACAACAGATCAACGAAGAGGAGGACGAGGAGGAGCTCGAGGCGGTGGCGCGCTCCGCCAGTTCCggcgacgacgacgacgacgacgtcGCCGGCGACAATCCGCTGGATTCCGATGAGGATCCCGCCGCCGCCGACGACGATGACCAGGGTGGGGATAATGTTGATCCCGAGATTAGCAAGCGAGAGAAGGCTAGATTGAGAGAAATGCAAAAAATGAAGAAACAGAAGATTCAGGAGATACTGGATGAGCAAAATGCGGCCATTGATGCCGACATGAACAATAGAGGAAAGGGGCGTCTGAAGTATCTCTTGCAGCAGACTGAGCTGTTTTCTCATTTTGCAAAAGGGGATCAATCTTCGTCACAGAAAAAGTCAAGGGGAAGGGGTCGCCATGCATCAAAAGTGACTGAGGAAGAGGAAGACGAAGAATAcctaaaggaagaagaagatggtgTAGCAAACACACGTCTGGTGACACAACCATCATgTATCCAAGGGAAGATGAGGGATTACCAACTGGCTGGACTAAACTGGCTCATACGATTGTATGAGAATGGAATAAATGGAATTCTGGCTGATGAAATGGGGCTCGGTAAAACATTGCAAACTATATCTTTATTGGGTTATTTGCACGAGTTCAGAGGAATCAAAGGCCCTCATATGGTAGTTGCTCCAAAATCTACTCTTGGAAATTGGATGAATGAGATTCGGCGTTTTTGTCCTGTTCTTCGTGCAATTAAGTTTCTTGGCAACCCCGATGAAAGGAGACATATAAGAGAGGAATTGTTGGTTGCCGGGAAGTTTGATGTCTGTGTCACAAGTTTTGAAATGGCAATCAAGGAGAAGACTGCTTTGCGTCGATTTAGTTGGCGCTACATAATTATTGATGAAGCTCATCGAATCAAGAATGAGAATTCCTTGCTGTCCAAAACAATGAGGCTCTACAGTACAAACTATCGCCTCCTTATTACTGGCACACCACTTCAGAATAATCTTCATGAACTCTGGTCTCTTCTCAACTTTCTTCTGCCCGAAATTTTTAGTTCTGCTGAAACTTTTGATGAATGGTTTCAAATCTCTGGTGAAAATGACCAACAGGAAGTTGTTCAACAATTACACAAGGTCCTCCGCCCATTTCTCCTTCGAAGGTTGAAGTCAGATGTTGAGAAAGGGTTGCCACCGAAAAAGGAAACTATTCTTAAAGTAGGCATGTCCCAAATGCAGAAACAGTATTATAGAGCACTACTGCAGAAGGATCTTGAGGTTGTAAATGCTGGTGGTGAACGGAAGCGCCTCCTGAACATAGCCATGCAACTACGCAAATGTTGTAACCATCCATATCTTTTCCAAGGTGCTGAACCTGGTCCTCCCTACACAACAGGAGATCATCTCATTACAAATGCTGGTAAAATGGTTCTTTTGGATAAGTTACTTCCTAAATTGAAAGAGCGTGATTCTAGGGTCCTTATATTTTCACAGATGACTAGGCTGCTAGACATACTTGAAGATTATTTAATGTTTCGTGGATATCAATATTGTCGCATTGATGGAAATACTGGTGGGGATGATCGAGATGCTTCCATTGATGCTTTCAACAAACCAGGAAGTGAGAAATTTGTCTTCCTGTTATCAACTCGTGCTGGAGGTCTTGGTATTAATCTTGCTACTGCTGATGTTGTCATTCTGTATGATAGTGACTGGAACCCACAAGTTGACTTGCAGGCTCAGGATCGTGCTCATAGGATTGGTCAAAAGAAAGAAGTTCAAGTTTTCCGTTTTTGTACTGAGTATACAATTGAAGAGAAAGTCATTGAAAGGGCCTACAAAAAGCTTGCACTTGATGCTCTGGTGATTCAGCAAGGGCGATTGGCTGAGCAGAAGACGGTAAATAAAGATGAGTTGCTTCAAATGGTTAGATTTGGGGCTGAAATGGTTTTCAGTTCCAAGGATAGTACAATTACAGATGAGGATATTGATAGAATTATTGCTAAAGGAGAGGAGGCAACTGCTGAGCTTGATGCCAAGATGAAGAAATTTACTGAAGATgccatcaaatttaagatggaTGACACTGCTGAGTTATATGATTTTGATGATGAGAAGgatGAGAACAGATTTGATATCAAAAAAATTGTGAGTGAGAACTGGATTGAACCACCAAAAAGGGAGCGGAAGCGCAATTACTCAGAGTCTGAATACTTCAAGCAAACAATGCGCCAAGGTGGTCCTACCAAACCAAAAGAGCCCCGTATTCCTAGGATGCCCCAGTTACATGATTTCCAGTTTTTCAACACACAAAGATTGAGTGAGCTGTATGAAAAGGAAGTACGCTATCTCATGcAAACACACCAGAAGAATCAAATAAAGGACTCAATCGATGTTGATGAACCAGAAGAGGTGGGAGATCCATTGACCGCTGAAGAGTTGGAAGAAAAGGAGCGCTTGCTAGAAGAGGGATTTTCATCATGGAGCCGGAGGGATTTTAATACTTTCATTAGGGCCTGTGAAAAATATGGCcgaattgatataaaaagtattgcTTCTGAGATGGAAGGAAAAACTGAGGAGGAAGTTGAAAGATATGCAAAGGTCTTCAAAGAAAGATACAAGGAATTAAATGATTATGAcagaattattaaaaacattgaaaGGGGGGAGGCAAGAATTTCTCGGAAAGATGAGATCATGAAAGCTATTGGGAAGAAGTTGGACCGTTACAAGAATCCTTGGCTAGAGTTGAAGATACAGTATGGGCAGAACAAAGGGAAGTTGTACAATGAAGAATGTGACAGATTCATgATATGCATGGTTCACAAACTTGGCTATGGGAACTGGGATGAGTTAAAGGCAGCATTTCGAACATCACCCTTGTTTCGATTTGATTGGTTTGTTAAGTCTCGCACAACTCAGGAACTGGCAAGGAGGTGTGACACCCTCATTCGGCTGGTAGAAAAGGAAAACCAAGAATATGATGAGAGGGAGAGACAAGCTCGCAAAGAGAAGAAACTTGCCAAAAGCATGACCCCATCAAAGCGTGCTTTGGCAAGACAGACAGAGAATCCATCTTTGAAGAAGCGCAAGCAGTTAACCATGGATGATTATGCAAGCACGgggaagagaagaaaataa 3219 0.4132 MARPSKPLSSSDEALSNASSSSEEEEQANEQQINEEEDEEELEAVARSASSGDDDDDDVAGDNPLDSDEDPAAADDDDQGGDNVDPEISKREKARLREMQKMKKQKIQEILDEQNAAIDADMNNRGKGRLKYLLQQTELFSHFAKGDQSSSQKKSRGRGRHASKVTEEEEDEEYLKEEEDGVANTRLVTQPSCIQGKMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGYLHEFRGIKGPHMVVAPKSTLGNWMNEIRRFCPVLRAIKFLGNPDERRHIREELLVAGKFDVCVTSFEMAIKEKTALRRFSWRYIIIDEAHRIKNENSLLSKTMRLYSTNYRLLITGTPLQNNLHELWSLLNFLLPEIFSSAETFDEWFQISGENDQQEVVQQLHKVLRPFLLRRLKSDVEKGLPPKKETILKVGMSQMQKQYYRALLQKDLEVVNAGGERKRLLNIAMQLRKCCNHPYLFQGAEPGPPYTTGDHLITNAGKMVLLDKLLPKLKERDSRVLIFSQMTRLLDILEDYLMFRGYQYCRIDGNTGGDDRDASIDAFNKPGSEKFVFLLSTRAGGLGINLATADVVILYDSDWNPQVDLQAQDRAHRIGQKKEVQVFRFCTEYTIEEKVIERAYKKLALDALVIQQGRLAEQKTVNKDELLQMVRFGAEMVFSSKDSTITDEDIDRIIAKGEEATAELDAKMKKFTEDAIKFKMDDTAELYDFDDEKDENRFDIKKIVSENWIEPPKRERKRNYSESEYFKQTMRQGGPTKPKEPRIPRMPQLHDFQFFNTQRLSELYEKEVRYLMQTHQKNQIKDSIDVDEPEEVGDPLTAEELEEKERLLEEGFSSWSRRDFNTFIRACEKYGRIDIKSIASEMEGKTEEEVERYAKVFKERYKELNDYDRIIKNIERGEARISRKDEIMKAIGKKLDRYKNPWLELKIQYGQNKGKLYNEECDRFMICMVHKLGYGNWDELKAAFRTSPLFRFDWFVKSRTTQELARRCDTLIRLVEKENQEYDERERQARKEKKLAKSMTPSKRALARQTENPSLKKRKQLTMDDYASTGKRRK 1072
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g0729 1072 PANTHER SNF2/RAD54 HELICASE FAMILY 9 1072 - -
Ssu1g0729 1072 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 503 654 IPR001650 -
Ssu1g0729 1072 MobiDBLite consensus disorder prediction 83 101 - -
Ssu1g0729 1072 MobiDBLite consensus disorder prediction 1020 1072 - -
Ssu1g0729 1072 Gene3D iswi atpase 904 936 - -
Ssu1g0729 1072 Gene3D - 937 1040 - -
Ssu1g0729 1072 SUPERFAMILY HAND domain of the nucleosome remodeling ATPase ISWI 761 851 IPR036306 GO:0003677|GO:0006338|GO:0031491
Ssu1g0729 1072 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 415 696 IPR027417 -
Ssu1g0729 1072 MobiDBLite consensus disorder prediction 1 101 - -
Ssu1g0729 1072 SMART ultradead3 194 386 IPR014001 -
Ssu1g0729 1072 MobiDBLite consensus disorder prediction 1020 1037 - -
Ssu1g0729 1072 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 210 375 IPR014001 -
Ssu1g0729 1072 MobiDBLite consensus disorder prediction 144 178 - -
Ssu1g0729 1072 MobiDBLite consensus disorder prediction 28 43 - -
Ssu1g0729 1072 SMART sant 849 898 IPR001005 -
Ssu1g0729 1072 SMART sant 951 1012 IPR001005 -
Ssu1g0729 1072 Pfam SLIDE 906 1016 IPR015195 GO:0003677|GO:0005634|GO:0006338
Ssu1g0729 1072 SMART helicmild6 529 613 IPR001650 -
Ssu1g0729 1072 Gene3D - 419 711 IPR027417 -
Ssu1g0729 1072 Gene3D - 199 414 IPR038718 -
Ssu1g0729 1072 PANTHER REMODELING FACTOR, PUTATIVE-RELATED 9 1072 - -
Ssu1g0729 1072 SUPERFAMILY Homeodomain-like 852 902 IPR009057 -
Ssu1g0729 1072 Coils Coil 19 45 - -
Ssu1g0729 1072 Gene3D ISWI, HAND domain 750 848 IPR036306 GO:0003677|GO:0006338|GO:0031491
Ssu1g0729 1072 ProSiteProfiles SANT domain profile. 848 900 IPR017884 -
Ssu1g0729 1072 CDD DEXHc_SMARCA1_SMARCA5 195 415 IPR044754 GO:0005524
Ssu1g0729 1072 Pfam SNF2-related domain 211 478 IPR000330 GO:0005524|GO:0140658
Ssu1g0729 1072 Pfam HAND 762 844 IPR015194 GO:0003677|GO:0006338|GO:0031491
Ssu1g0729 1072 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 176 413 IPR027417 -
Ssu1g0729 1072 Coils Coil 1006 1033 - -
Ssu1g0729 1072 MobiDBLite consensus disorder prediction 9 27 - -
Ssu1g0729 1072 SUPERFAMILY Homeodomain-like 904 1026 IPR009057 -
Ssu1g0729 1072 Gene3D - 849 903 - -
Ssu1g0729 1072 CDD SANT 852 896 IPR001005 -
Ssu1g0729 1072 MobiDBLite consensus disorder prediction 1048 1072 - -
Ssu1g0729 1072 Pfam Helicase conserved C-terminal domain 501 613 IPR001650 -
Ssu1g0729 1072 CDD SF2_C_SNF 499 624 - -
Ssu1g0729 1072 Coils Coil 89 116 - -
Ssu1g0729 1072 MobiDBLite consensus disorder prediction 55 82 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g0729 Ssu-Chr1 16232269 16239704 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g0729 219 640 RAD5 or RAD16-like Gene Family AT1G02670 26.931 4.04e-41 160
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Ssu1g0729 SNF2_N 1.4e-71 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g0729 K11654 - gmx:100809750 1945.63
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g0729 1 16232269 16239704 Ssu1g0729 1 16232269 16239704 ECH
Ssu6g0290 6 4540545 4550382 Ssu1g0729 1 16232269 16239704 PCT