Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g0728 ATGGGTGGGTGTTTTCCTTGTTTTGGATCATCCAACAAGGACGACAGTGGTGGAGTGAGGGTGAAGGAGGTGCCCAGCAAGGATTCTTCTTTTAAAGAAGCTGCTTCTGTTGTTCCTCAGTCTCACCACCCCAGCAGGGTTAATTCAGataaatcaaaatcATCCCGAAGTGGTACAGATACTAAGAAGGAACCACCGGTGCCAAAGGATGGCCCAACGGCCCATATTGCTGCACAAACATTTACATTCCGAGAGCTTGCAGCTGCTACAAAGAATTTTAGGCCAGAATGTTTATTAGGCGAAGGAGGTTTTGGACGAGTTTACAAAGGACGCCTGGAGAGCACAGGACAAGTAGTTGCTGTAAAACAGCTTGACCGAAATGGTCTCCAAGGAAATCGAGAATTTTTGGTGGAAGTTCTCATGCTCAGTCTTTTACATCATCCAAATCTTGTGAACTTAATTGGTTATTGTGCAGATGGTGATCAGCGGCTGCTTGTTTATGAATTTATGCCATTGGGATCTTTGGAGGATCATTTACATGATCTTCCTCCTGACAAGGAACCTCTGGACTGGAACACTAGGATGAAAATAGCAGCTGGAGCAGCAAAGGGATTGGAATATTTGCATGACAAGGCAAATCCCCCAGTGATATATAGGGACTTAAAATCATCCAACATCCTCCTAGACGAGGGTTATCATCCTAAGTTATCAGATTTTGGGCTGGCAAAACTTGGTCCAGTTGGGGACAAGACTCATGTGTCCACACGAGTAATGGGAACATACGGCTATTGTGCCCCAGAATATGCTATGACTGGTCAACTAACTCTGAAATCTGATGTCTACAGTTTCGGAGTTGTCTTCCTTGAACTTATCACTGGGCGCAAGGCTATTGACAATACACGTGCACATGGAGAGCACAATCTTGTTGCATGGGCACGGCCTCTCTTCAAAGACCGTAGGAAGTTCCCCAAAATGGCTGACCCTCTTCTTCAAGGCCGTTACCCGATGCGAGGACTGTACCAAGCACTTGCAGTTGCGGCAATGTGTCTGCAGGAACAAGCTGCTACGCGGCCTCTTATAGGGGATGTGGTGACTGCTCTCACATATCTGGCCTCACAGACATATGATCCAAATGCAGCGAATCAATCCAGCAGGGTTGGCTCATCAACCCCTAGGCACAGGGATGACCGAAGGAGCATGGCAGATGGTGTGGATAGCCCGGACCGTGGCCGGCTTGGCTCCCCTTCCACCCACAGAAACTCCCCCGACTTCAGGAAGAGAGACAGCAGGGATCCGAGTGTCGGGACCGAGTTAGGCCGGATCGACACTGGTGGTGGGTCAGGGAGAAAATGGGGGTTGGATGATTTTGAAAGGCAGGAGTCGCAGAGAGACAGCCCTGTAAATACTGCAAGAGCCAGAGAGACTCCGTGGAACCGTGACCTGGACAGAGAGCGCGCAGTTGCAGAAGCAAAAGTGTGGGGCGAGAAttggagagagaagaagaaagcaaaTGCCATGGGTAGCTTTGATGCTACGAATGACTGA 1545 0.4816 MGGCFPCFGSSNKDDSGGVRVKEVPSKDSSFKEAASVVPQSHHPSRVNSDKSKSSRSGTDTKKEPPVPKDGPTAHIAAQTFTFRELAAATKNFRPECLLGEGGFGRVYKGRLESTGQVVAVKQLDRNGLQGNREFLVEVLMLSLLHHPNLVNLIGYCADGDQRLLVYEFMPLGSLEDHLHDLPPDKEPLDWNTRMKIAAGAAKGLEYLHDKANPPVIYRDLKSSNILLDEGYHPKLSDFGLAKLGPVGDKTHVSTRVMGTYGYCAPEYAMTGQLTLKSDVYSFGVVFLELITGRKAIDNTRAHGEHNLVAWARPLFKDRRKFPKMADPLLQGRYPMRGLYQALAVAAMCLQEQAATRPLIGDVVTALTYLASQTYDPNAANQSSRVGSSTPRHRDDRRSMADGVDSPDRGRLGSPSTHRNSPDFRKRDSRDPSVGTELGRIDTGGGSGRKWGLDDFERQESQRDSPVNTARARETPWNRDLDRERAVAEAKVWGENWREKKKANAMGSFDATND 514
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g0728 514 SUPERFAMILY Protein kinase-like (PK-like) 75 367 IPR011009 -
Ssu1g0728 514 MobiDBLite consensus disorder prediction 46 69 - -
Ssu1g0728 514 Pfam Protein kinase domain 98 307 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu1g0728 514 SMART serkin_6 93 370 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu1g0728 514 PANTHER SERINE/THREONINE-PROTEIN KINASE PBL27 1 508 - -
Ssu1g0728 514 MobiDBLite consensus disorder prediction 389 405 - -
Ssu1g0728 514 CDD STKc_IRAK 99 368 - -
Ssu1g0728 514 PANTHER OS07G0668900 PROTEIN 1 508 - -
Ssu1g0728 514 MobiDBLite consensus disorder prediction 1 73 - -
Ssu1g0728 514 MobiDBLite consensus disorder prediction 420 435 - -
Ssu1g0728 514 MobiDBLite consensus disorder prediction 377 481 - -
Ssu1g0728 514 ProSiteProfiles Protein kinase domain profile. 93 370 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu1g0728 514 Gene3D Phosphorylase Kinase; domain 1 67 169 - -
Ssu1g0728 514 ProSitePatterns Serine/Threonine protein kinases active-site signature. 216 228 IPR008271 GO:0004672|GO:0006468
Ssu1g0728 514 Gene3D Transferase(Phosphotransferase) domain 1 170 389 - -
Ssu1g0728 514 ProSitePatterns Protein kinases ATP-binding region signature. 99 122 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g0728 Ssu-Chr1 16210560 16229605 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g0728 4 411 Glycoside Hydrolase AT3G07070 60.723 7.64e-172 489
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-1 Ssu1g0728 Pkinase 5.9e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g0728 - - gmx:100814575 1009.98
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g0728 1 16210560 16229605 Ssu1g0728 1 16210560 16229605 ECH