Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g0720 ATGTCCACCTCTAGACCCTCAGATGCTTCCCCCAAAGGATATGAGTCCAACCAAACCCAAATGAATTTATCTCTTCTTCAGCGTAACACATCACCTTCTGGTGAGAGAAGAGGCCGAGGAAAGCAAGCAGAACCTGGAAGGTTTCTTGGGGTAAGGAGGCGCCCTTGGGGTAGATATGCTGCTGAAATCAGAAACCCCATAACCAAAGAAAGACATTGGCTTGGAACATTTGACACTGCTGAAGAAGCAGCTCTTGCTTATGACAGAGCTGCCCTGTCCATGAAAGGATGCCAAGCAAGAACCAACTTCATATATTCTGAAGATACCAATATTCCCCACAATGTTCTCACTCCTACGGATTCTCAACCTCTCTTGCCACCTTCACAATTCCTCAATAACACTCACAACACACAACCAACCAACCAAAGTAGCCTATCTCACCTTGGTACTACTTCTTCCCACATTGAAAACCCTTCTGATATGTGTGCATATGGGTCACCTCAGGatgaaaatttcttcttctccaGTGATTCTAACTCGGGCTATCTTGAATGCATAGTTCCTGATAATTGTTTCAGGAAGAGCAATGCCAGTGCTTCAAGTCATGACCTAAATGCTGGCCACGTTAACTCAAACTCCATGCAGGTTCAGTCACATTTTGACACCACTCAAGAAGCCTTGAGCATGCAAACAACAGTGGCCTCTAACTATGCAGATTTTTCTTACCCCGGTCAAGGATTATGGGATGATCAGCAATCATGGGGTTGCAGTTCCAATGAACTAGCAGCTATGTTTAACAATCCATCAAGGGTTGAGGAAGGGTGCACGGATGCATTGTGTCCCATCACTGATGGTCCAAGCTACGGGCTAACGACTCAGGCTGAGGCTGTTTCTTCAACTACTCGTTCTCCATCGATTCCTCCCTTTGGGGATATTGACTTGGGATACTCACTATTCTGA 960 0.449 MSTSRPSDASPKGYESNQTQMNLSLLQRNTSPSGERRGRGKQAEPGRFLGVRRRPWGRYAAEIRNPITKERHWLGTFDTAEEAALAYDRAALSMKGCQARTNFIYSEDTNIPHNVLTPTDSQPLLPPSQFLNNTHNTQPTNQSSLSHLGTTSSHIENPSDMCAYGSPQDENFFFSSDSNSGYLECIVPDNCFRKSNASASSHDLNAGHVNSNSMQVQSHFDTTQEALSMQTTVASNYADFSYPGQGLWDDQQSWGCSSNELAAMFNNPSRVEEGCTDALCPITDGPSYGLTTQAEAVSSTTRSPSIPPFGDIDLGYSLF 319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g0720 319 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 1 319 - -
Ssu1g0720 319 Pfam AP2 domain 50 96 IPR001471 GO:0003700|GO:0006355
Ssu1g0720 319 CDD AP2 47 103 IPR001471 GO:0003700|GO:0006355
Ssu1g0720 319 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 1 319 - -
Ssu1g0720 319 MobiDBLite consensus disorder prediction 1 33 - -
Ssu1g0720 319 SMART rav1_2 47 110 IPR001471 GO:0003700|GO:0006355
Ssu1g0720 319 MobiDBLite consensus disorder prediction 129 152 - -
Ssu1g0720 319 PRINTS Ethylene responsive element binding protein signature 70 86 IPR001471 GO:0003700|GO:0006355
Ssu1g0720 319 PRINTS Ethylene responsive element binding protein signature 48 59 IPR001471 GO:0003700|GO:0006355
Ssu1g0720 319 SUPERFAMILY DNA-binding domain 48 105 IPR016177 GO:0003677
Ssu1g0720 319 MobiDBLite consensus disorder prediction 1 49 - -
Ssu1g0720 319 MobiDBLite consensus disorder prediction 34 48 - -
Ssu1g0720 319 Gene3D AP2/ERF domain 47 105 IPR036955 GO:0003700|GO:0006355
Ssu1g0720 319 ProSiteProfiles AP2/ERF domain profile. 47 104 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g0720 Ssu-Chr1 16026330 16027289 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g0720 1 193 AP2-EREBP Transcription Factor Family AT5G18560 46.371 8.75e-55 180
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Ssu1g0720 AP2 6.9e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g0720 - - gmx:102664746 519.62
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g0296 6 4707408 4708439 Ssu1g0720 1 16026330 16027289 PCT