Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g0719 ATGGAGCAGTACGGCCGGTCCAGTGAAGGTTCGCGGTCTGATCCGTCGGCGGAATGGGCCGGGCCCGAAACTGGGCTTGAAgAGTCTATGTGGCAATTGGGAATGGGTGCTGCGGAGGAATCGTATCCGCAACGGCCCGATGAGGTTGATTGCACTTACTATTTGAGGACCGGCTTCTGTGGCTTCGGTTCGCGCTGTCGGTTCAACCATCCTCGTGACCGTGGCGCgGTTGTTGGAGCTGAGAGGACAGCGGGGGAGTATCCGGAACGAGTAGGCCAGCCTGTTTGCCAGTACTATATGAGGACAAGAACGTGCAAGTTTGGTTTGTCCTGCAAGTACCACCACCCTAGGCAGGCAGGAGGCGCTGCTATCCCTGTGTCACTAAATTATTATGGATATCCGTTGCGACCGGGCGAGAAGGAGTGTTCCTATTATGTGAAAACAGGACAATGCAAGTTTGGTGCAACTTGTAAATTCCATCATCCAGATCCTGCTGCTGTCCAAGTTCCAGCACTATCACCAGTTACCCCAGTTTCGCCTTTACCTGTACCAGTACCTTCGCCGTTATATTCAACCATGCAGCCCCCACCTGGCCATTCATCCCAGCAAATTGGTGTACTGGTTGCAAGGCCTCCTCTGCTGCCTGGCTCATTGGTCCAGAGTCTCTATGGACCTGTGGTAGTGTCCCCTGCCATGGTACCTATTTCTGGCTGGGGTCCTTATCAAGCTTCTGGAACAGGCCCTGTACTTCCTTCTGGTACTCCATCTAATATTGGTTCAGCACAGCTTTATGGGATAACCCAGCTACCTTCATCAGCAACTGCCTATCCTGGACCTTATCAACCTTCTGGTTCCTCAGTTGGTCCTTCAAGAAGTAGTCAGAAGGAGTGGGCATTTCCAGAGAGGTCTAATCAACCAGAATATCAGTATTACCCAAAAACAGGGGAGGTTAAATTTGGTCCATCATATAAGTATCACCCTCCACCAGACACGAGTGCACCAAAAGCAAATGTGGTCCTTAGTCCTGCTGGTCTTCCTTTGCGTCCGAGTTGCTTGCCTCATCAGTTGCATTTGCTTGAAATCTTTGACAATGCCAGGAACATCTTGTGCTGCATGTTTCATTGTTGA 1128 0.508 MEQYGRSSEGSRSDPSAEWAGPETGLEESMWQLGMGAAEESYPQRPDEVDCTYYLRTGFCGFGSRCRFNHPRDRGAVVGAERTAGEYPERVGQPVCQYYMRTRTCKFGLSCKYHHPRQAGGAAIPVSLNYYGYPLRPGEKECSYYVKTGQCKFGATCKFHHPDPAAVQVPALSPVTPVSPLPVPVPSPLYSTMQPPPGHSSQQIGVLVARPPLLPGSLVQSLYGPVVVSPAMVPISGWGPYQASGTGPVLPSGTPSNIGSAQLYGITQLPSSATAYPGPYQPSGSSVGPSRSSQKEWAFPERSNQPEYQYYPKTGEVKFGPSYKYHPPPDTSAPKANVVLSPAGLPLRPSCLPHQLHLLEIFDNARNILCCMFHC 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g0719 375 ProSiteProfiles Zinc finger C3H1-type profile. 45 73 IPR000571 GO:0046872
Ssu1g0719 375 ProSiteProfiles Zinc finger C3H1-type profile. 90 118 IPR000571 GO:0046872
Ssu1g0719 375 SUPERFAMILY CCCH zinc finger 93 118 IPR036855 GO:0046872
Ssu1g0719 375 ProSiteProfiles Zinc finger C3H1-type profile. 136 164 IPR000571 GO:0046872
Ssu1g0719 375 SUPERFAMILY CCCH zinc finger 138 164 IPR036855 GO:0046872
Ssu1g0719 375 Gene3D - 121 175 - -
Ssu1g0719 375 MobiDBLite consensus disorder prediction 1 24 - -
Ssu1g0719 375 SUPERFAMILY CCCH zinc finger 47 73 IPR036855 GO:0046872
Ssu1g0719 375 MobiDBLite consensus disorder prediction 275 300 - -
Ssu1g0719 375 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 47 72 IPR000571 GO:0046872
Ssu1g0719 375 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 138 162 IPR000571 GO:0046872
Ssu1g0719 375 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 93 117 IPR000571 GO:0046872
Ssu1g0719 375 Gene3D - 43 120 - -
Ssu1g0719 375 PANTHER PROTEIN PHOSPHATASE RELATED 1 350 - -
Ssu1g0719 375 SMART c3hfinal6 90 117 IPR000571 GO:0046872
Ssu1g0719 375 SMART c3hfinal6 136 163 IPR000571 GO:0046872
Ssu1g0719 375 SMART c3hfinal6 45 72 IPR000571 GO:0046872
Ssu1g0719 375 PANTHER TRANSCRIPTION FACTOR C3H FAMILY-RELATED 1 350 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g0719 Ssu-Chr1 16016008 16021871 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g0719 1 353 C2H2 Transcription Factor Family AT5G18550 55.616 2.38e-119 352
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Ssu1g0719 zf-CCCH 4e-09 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g0719 - - gmx:100812433 625.935
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g0719 1 16016008 16021871 Ssu1g0719 1 16016008 16021871 ECH
Ssu6g0297 6 4715301 4719792 Ssu1g0719 1 16016008 16021871 PCT