Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g0716 ATGTCGAGGAGAAAGGTTAGAGAGCCAAAGGAGGAAAACGTGACTCTGGGTCCAGCTGTTAGAGATGGTGAACATGTCTTTGGGGTGGCTCGCATCTTTGCCTCCTTTAATGACACCTTCATCCATGTCACTGATTTGTCTGGGAGGGAAACCCTTGTCCGCATCACTGGTGGAATGAAGGTTAAAGCTGACAGAGATGAATCGTCTCCATATGCTGCTATGCTTGCAGCGCAAGATGTTGCTGCTAGATGCAAGGAACTGGGCATAACCGCTCTTCATATCAAGCTCCGTGCCACTGGTGGAAACAAGACTAAAACACCTGGTCCTGGTGCTCAATCAGCTCTTCGTGCCCTTGCTCGTTCAGGAATGAAAATTGGTCGTATAGAGGATGTGACTCCCATTCCTTCGGATAGCACTCGTAGAAAGAGCGGTAGAAGGGGTAGAAGGCTTTAA 453 0.4879 MSRRKVREPKEENVTLGPAVRDGEHVFGVARIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVAARCKELGITALHIKLRATGGNKTKTPGPGAQSALRALARSGMKIGRIEDVTPIPSDSTRRKSGRRGRRL 150
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g0716 150 PANTHER 40S RIBOSOMAL PROTEIN S14/30S RIBOSOMAL PROTEIN S11 2 150 IPR001971 GO:0003735|GO:0005840|GO:0006412
Ssu1g0716 150 Pfam Ribosomal protein S11 28 146 IPR001971 GO:0003735|GO:0005840|GO:0006412
Ssu1g0716 150 SUPERFAMILY Translational machinery components 23 148 - -
Ssu1g0716 150 PANTHER BNAA05G27530D PROTEIN 2 150 - -
Ssu1g0716 150 Gene3D Ribosomal protein S11 1 150 IPR036967 GO:0003735|GO:0005840|GO:0006412
Ssu1g0716 150 Hamap 30S ribosomal protein S11 [rpsK]. 3 147 IPR001971 GO:0003735|GO:0005840|GO:0006412
Ssu1g0716 150 MobiDBLite consensus disorder prediction 130 150 - -
Ssu1g0716 150 ProSitePatterns Ribosomal protein S11 signature. 115 137 IPR018102 -
Ssu1g0716 150 PIRSF RPS11p_RPS11a_RPS14e_RPS11o 1 147 IPR001971 GO:0003735|GO:0005840|GO:0006412
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g0716 1 139 Cytoplasmic Ribosomal Protein Gene Family AT3G52580 90.647 1.16e-92 263
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g0716 K02955 K01000 gmx:100786325 268.085