Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g0709 ATGTCGCCTTCCTGTGCCAAAAACTTCTTCCAGAGGTTCTGGCTAGATGAATTCCAAGTGGGAAATATTCCCCATGGCAGCTTTTTGTCCAATGATGATCTCCTGCCATCTCTTGGAGCCAGAATGAACCAGGAAACTAGACTTAGAAGATACATAATCTCCCCTTTCAATCCTCGCTATAGGGCTTGGGAGTTGTTACTGGTTGTTCTAGTCATATACTCAGCTTGGATTTGCCCATTTGAGTTTGCCTTTCTCCCTTACAAGGAAGATGCTCTATTCATCCTAGACAACATTGTCAATGGCTTCTTTGCCATTGACATAGTGTTGACATTCTTTGTTGCATACCTTGATCACCATTCTTACCTTCTTGTTGATGATCCAAAGAAGGTTGCTATCAGGTACCTTTCTACCTGGTTTGCTTTTGATGTCTGCTCAACCGTACCGTTTCAATCCTTCAGCTTCCTCTCCGCTAATCATAGCAGTGAGCTTGGCTTCAAAGTTTTTAACATGTTTCGGTTATGGCGTTTGAGACGAGTCAGTTCTCTGTTTGCAAGACTTGAAAAGGACATTCGCTTCAACTATTTCTGGACTAGGTGCACAAAGCTCACTGCTGTGACCTTGTTTGCAGTGCACTGTGCGGGATGCTTTAACTATCTCATTGCAGATAGGTACCCAGATTCCAAAAGAACCTGGATTGGTGCAGTGTACCCAAATTTCAAAGAAGAAAGCCTTTGGGACAGATATGTCACTGCAATATACTGGTCCATTGTCACTCTTACTACCACTGGCTATGGGGATTTACATGCTGAGAACACGAGAGAGATGCTGTTTGATATTGCTTACATGCTGTTCAACTTGGGTTTAACATCATACATCATTGGAAACATGACTAACCTTGTAGTCCACTGGACCAGCCGGACCAGAAATTTTAGAGAGACGGTCAAAGCAGCTTCTGAATTTGCTTCCAGAAATCATTTGCCCCATCGCATACAGGATCAAATGTTGTCCCATATATGTTTGAGGTTTAAAACAGAAGGACTGAAGCAGCAAGAAACATTAAATGATCTTCCAAAGGCAATTCGTTCAAGCATTGCACACCATTTGTTTTTTCCTGTCGTGCAAAAGGTCTACCTCTTCCAAGGAGTGTCCCATGATTTCCTTTTCCAACTGGTTTCAGATATGGAAGCTGACTATTTCCCACCCAAGGAAGATGTGATACTGCAAAACGAGTCTTCAACAGAAGTTTATGTGCTGGTTTCAGGGGCAGTGGTTTTTGGGAAGGCAGTTGCAGTAGATGCATTTGGAGAGATTGGTGTTTTATATCATATACCACAGCCTTTTGCAGTTCGGACCACAGAACTTTCTCAGATTTTAAGACTCAACAGAACATCCTTAATGAATGTTTTACAAGCAAATCCAGGAGACGCACAAATTATAATGGATAACCTTTTAATGAGATTGAATGGGCGTGAAGGTTTCGACTTCGAATATCCATGCACAGATTCTGGATTGGTTCCACACGAACTGCTTCAAGGAGGTAACACGAGAGGAAACTCTTCTCACGAGTGTACAAATAATTCACATGAGCATTCATTAATGCATGAAGGAGGGCACATAGATATTAGAAACTCGGAGACCAGTTTGGGTAAGGTGACTAATGATGATCATTTAGTCACTAAACATAACATGATCCCTGAGCCTGATAGAATAGATCCTCATGTGGCTGCACACAAAGGGAATCTAGACATTGTTGAAATTCTGCTTGAAAGAGACGCAAATCCTAACCCAAATTCCATAGGGTGGACACAAAAAAATCTagtaaaacaaccaaaaaacaAGAGCATTCGTGACCAAAAAATGAGTTGTGAAAACGAGAAGTTAGATGAATTTAGAATACAGATTGCGGAGCCAGAAATCATTGACCTTGACAGGAATGGCTCAACCAGAAACAGAAGACAAGATGGTACTAGGTCTATCAAGTTCCCTTTGgagaaaataaacacaaactCCAATTCAAGAAATTCTAACTGTCCAAGTGATAGAGAATCGGCAAGGCTCATCAAGAAGAGGGTAACAATTCACTTGCTAAACGAATGCGGGAGTACCTCACAGGGACAGCATGGAAAATTAATAATCCTGCCTGATTCATTAGAAGAGCTGCTAAAAATTGCTGGTGAAAAATTTGGCGGCTCCAACCCtacaaaagtaattaatacaGAGAATGCAGAGATAGATGACATAAATGTCATCCGAGATGGAGATCATCTATTTCTTCTATGCAGcgataatgaaaattttagttcATGA 2307 0.4027 MSPSCAKNFFQRFWLDEFQVGNIPHGSFLSNDDLLPSLGARMNQETRLRRYIISPFNPRYRAWELLLVVLVIYSAWICPFEFAFLPYKEDALFILDNIVNGFFAIDIVLTFFVAYLDHHSYLLVDDPKKVAIRYLSTWFAFDVCSTVPFQSFSFLSANHSSELGFKVFNMFRLWRLRRVSSLFARLEKDIRFNYFWTRCTKLTAVTLFAVHCAGCFNYLIADRYPDSKRTWIGAVYPNFKEESLWDRYVTAIYWSIVTLTTTGYGDLHAENTREMLFDIAYMLFNLGLTSYIIGNMTNLVVHWTSRTRNFRETVKAASEFASRNHLPHRIQDQMLSHICLRFKTEGLKQQETLNDLPKAIRSSIAHHLFFPVVQKVYLFQGVSHDFLFQLVSDMEADYFPPKEDVILQNESSTEVYVLVSGAVVFGKAVAVDAFGEIGVLYHIPQPFAVRTTELSQILRLNRTSLMNVLQANPGDAQIIMDNLLMRLNGREGFDFEYPCTDSGLVPHELLQGGNTRGNSSHECTNNSHEHSLMHEGGHIDIRNSETSLGKVTNDDHLVTKHNMIPEPDRIDPHVAAHKGNLDIVEILLERDANPNPNSIGWTQKNLVKQPKNKSIRDQKMSCENEKLDEFRIQIAEPEIIDLDRNGSTRNRRQDGTRSIKFPLEKINTNSNSRNSNCPSDRESARLIKKRVTIHLLNECGSTSQGQHGKLIILPDSLEELLKIAGEKFGGSNPTKVINTENAEIDDINVIRDGDHLFLLCSDNENFSS 768
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g0709 768 Gene3D Helix hairpin bin 302 367 - -
Ssu1g0709 768 PANTHER INWARDLY RECTIFYING POTASSIUM CHANNEL SUBUNIT 1 768 - -
Ssu1g0709 768 SUPERFAMILY Voltage-gated potassium channels 55 301 - -
Ssu1g0709 768 Gene3D Jelly Rolls 368 489 IPR014710 -
Ssu1g0709 768 ProSiteProfiles Ankyrin repeat profile. 573 599 IPR002110 GO:0005515
Ssu1g0709 768 PRINTS EAG/ELK/ERG potassium channel family signature 107 116 IPR003938 GO:0005249|GO:0006813|GO:0016020
Ssu1g0709 768 PRINTS EAG/ELK/ERG potassium channel family signature 248 265 IPR003938 GO:0005249|GO:0006813|GO:0016020
Ssu1g0709 768 PRINTS EAG/ELK/ERG potassium channel family signature 73 80 IPR003938 GO:0005249|GO:0006813|GO:0016020
Ssu1g0709 768 PRINTS EAG/ELK/ERG potassium channel family signature 96 106 IPR003938 GO:0005249|GO:0006813|GO:0016020
Ssu1g0709 768 PRINTS EAG/ELK/ERG potassium channel family signature 274 285 IPR003938 GO:0005249|GO:0006813|GO:0016020
Ssu1g0709 768 PRINTS EAG/ELK/ERG potassium channel family signature 292 301 IPR003938 GO:0005249|GO:0006813|GO:0016020
Ssu1g0709 768 CDD CAP_ED 378 480 IPR000595 -
Ssu1g0709 768 SUPERFAMILY cAMP-binding domain-like 305 487 IPR018490 -
Ssu1g0709 768 PANTHER POTASSIUM CHANNEL AKT1 1 768 IPR045319 GO:0005249|GO:0006813
Ssu1g0709 768 SMART cnmp_10 378 484 IPR000595 -
Ssu1g0709 768 ProSiteProfiles KHA domain profile. 690 768 IPR021789 -
Ssu1g0709 768 Pfam KHA, dimerisation domain of potassium ion channel 689 758 IPR021789 -
Ssu1g0709 768 Gene3D - 61 301 - -
Ssu1g0709 768 ProSiteProfiles cAMP/cGMP binding motif profile. 378 486 IPR000595 -
Ssu1g0709 768 Pfam Ion transport protein 61 307 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g0709 Ssu-Chr1 15795688 15799502 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g0709 1 763 Ion Channels AT4G18290 57.494 0.0 842
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g0709 K21867 - gmx:100811356 1394.02
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g0709 1 15795688 15799502 Ssu1g0709 1 15795688 15799502 ECH