Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g0689 atgagGAGAAACTGCAACTTGGAACTTGCCCTCTTTCCTCCCTGCGATTCTGGCCCCCGCCGCCACCCCATGGTTGAAGAAGCTAGTGAGATCAGCCCAATGCAAAATTacctccatcaccaccaccaccggcaGGAACAGCAGCAGCCGCTGACTATTTTCTATGATGGGAAGATTTGTGTTGCTGATGTCACAGAGTTTCAGgccaaatccattttaatgcttgcaaataaaaaaatggaggaAAGAGTGAGGACACCAACTGGGTCAGAGCCATCTTCACCAACAATAATGCAATCTCATCATCAAGTGTATAGCCCTGGCACTGGCCTTTCCATGAGAAAATCGTTGCAGCTGTTCCTTCAGAAGAGAAAGATTCGGGTCCAAGAAGCATCGCCATACCATCACTAG 411 0.4039 MRRNCNLELALFPPCDSGPRRHPMVEEASEISPMQNYLHHHHHRQEQQQPLTIFYDGKICVADVTEFQAKSILMLANKKMEERVRTPTGSEPSSPTIMQSHHQVYSPGTGLSMRKSLQLFLQKRKIRVQEASPYHH 136
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g0689 136 ProSiteProfiles Tify domain profile. 44 78 IPR010399 -
Ssu1g0689 136 PANTHER PROTEIN TIFY 4A-RELATED-RELATED 1 136 IPR040390 -
Ssu1g0689 136 SMART tify_2 44 78 IPR010399 -
Ssu1g0689 136 MobiDBLite consensus disorder prediction 87 108 - -
Ssu1g0689 136 Pfam tify domain 46 77 IPR010399 -
Ssu1g0689 136 Pfam Jas motif 114 134 IPR018467 -
Ssu1g0689 136 MobiDBLite consensus disorder prediction 81 108 - -
Ssu1g0689 136 PANTHER - 1 136 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g0689 Ssu-Chr1 15345768 15348086 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g0689 1 135 Tify Gene Family AT1G30135 42.029 4.02e-26 94.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Tify Ssu1g0689 tify 3.4e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g0689 - - gmx:100500349 224.942
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g0689 1 15345768 15348086 Ssu1g0689 1 15345768 15348086 ECH