Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g0687 ATGCTGATCAGGGCTGGGATTTCGTGGGCACAAACTGGTTCAATATGTGGCCTCTCCCCTTCCCAGCGCGACAAGTTGCCCACAATCACCAAAAAGGACCTTCTCCTCGAAACTGAATGCGTCATCTGTCTCAACGAGATCGGGACTGACCAACTAGCTCGAAGGGTTCCCGATTGCAACCATGGCTTCCATTTGGAATGCGTCAACGTGTGGCTCTCCAAGCACCCTCTCTACCCCATCTGTAGAGCCAAACTCGACCCTTTACTTTTCTCTTCCTCTAAAAAGCCATGCTGA 294 0.5136 MLIRAGISWAQTGSICGLSPSQRDKLPTITKKDLLLETECVICLNEIGTDQLARRVPDCNHGFHLECVNVWLSKHPLYPICRAKLDPLLFSSSKKPC 97
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g0687 97 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 9 88 IPR013083 -
Ssu1g0687 97 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL23 16 95 - -
Ssu1g0687 97 PANTHER RING-H2 FINGER PROTEIN ATL61-RELATED-RELATED 16 95 - -
Ssu1g0687 97 ProSiteProfiles Zinc finger RING-type profile. 40 82 IPR001841 -
Ssu1g0687 97 Pfam RING-like zinc finger 39 68 IPR001841 -
Ssu1g0687 97 SUPERFAMILY RING/U-box 26 88 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g0687 Ssu-Chr1 15307625 15308407 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g0687 17 97 C3H Transcription Factor Family AT5G42200 43.023 5.95e-19 74.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g0687 K19037 - gmx:100817919 129.413