Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g0678 ATGGAGGAGGATGAGATTCAAGCACAGGCGTGTAAGTTCCCTAGAGTTGGAAATGGTAGTAGGAACGAGTCAAACAAGATAGGTTCCACCAGAGGGAGTGAGCAATAccaagaggaggaagaagatgCAGAACTAAGAAGAGGAGGTGGTGCTGTTGGTGGAGGAGGAGGGAGTGATGGTAGCACAAACCATTTCCAAAGTAGTTGGCACCACTCTTCAAGAATCATAAGGGTGTCTAGAGCATCTGGTGGCAAAGACAGGCACAGTAAGGTAATGACCTCAAAGGGGTTAAGAGACAGAAGGGTTAGGCTTTCTGTGACCACAGCTATTCAGTTCTATGACCTTCAAGATCGCTTGGGTTATGACCAACCTAGCAAAGCTGTGGAGTGGTTAATCAAAGCTGCCCAAGATGCCATCTCGGAGCTTCCTTCTCTCAACAATCCCTTCCCTGAGACCCCTAAGCAGCCAAGTGATGAGAAAAGGCCTAGTGGTCAGCAAGGCCTTGATGATGCAGATGGAGACGCCACTTACCAGCAAAACCAAAGCCAGAACGTCTCTTTGTCCAAGTCTGCTTGTAGCAGCACTTCCGAGACCAGCAAGGGTTCTGGCTTGTCCCTCTCAAGGTCTGAGATCCGTGTGAAGGCAAGGGAGAGGGCAAGGGAAAGAGCagcaaaagaaaaggataaagaaaaagagaaagagaatgagtgTAGCATCGCACATCACCACCACAATGTGAACAACAACAACCCCATGTCTCACACTGCTACTTTCACTGAGCTTCTCACTGGTGGGATTGGGAGCACAGTAACAGTTAATCCCACAACTACAAGTCCTAATGGATCATCAGTTCATCAGATCCATCATGATGAGGCTAATCTATTCAACAAGGGAAGGCAGCAGCAACATTGGTCTCCAGCAGTGACACCTATGGACTACTTCAGCTCAGGCCTCTTGGCGGGGCCTTCTTCATCATCTGCAAGAACTCAACACCAATCTTCTCCTGTGTTCCAGCTGGGACATGCCCTTCCCATCTCACCATTCAGTGGAGAAAACAACTCGGATCAGCTGCAGCATTTCTCCTTCATGCCTGACCATCTTAACATGCCACCTGTGGTTACTTCGTCTGCCTCTTCTTCTCAGCCCGGCGGGGGTGACTATAACCTCAACTTCAGCATCTCTTCGGGCCTTGCTGGTTACAATAGGGGGACCCTTCAGTCCAATTCTCCGTCTTTTTTGCCTCACCTGCAGAGGTTTCAACCCATAGACGGATCATCCAATCTACCTTTCTTCATAGGAGCTCCTGCTCCTCCAACCAtggacaacaacaacaacaaccaccatcaccaccttcAGTTCTCACCTGTCTTCGATGGCCGCTTGCAACTTTGCTATGGCGATGGAACCAGACATTCTGACCACAAGGGCAAAGGCAAGAACTAA 1443 0.4622 MEEDEIQAQACKFPRVGNGSRNESNKIGSTRGSEQYQEEEEDAELRRGGGAVGGGGGSDGSTNHFQSSWHHSSRIIRVSRASGGKDRHSKVMTSKGLRDRRVRLSVTTAIQFYDLQDRLGYDQPSKAVEWLIKAAQDAISELPSLNNPFPETPKQPSDEKRPSGQQGLDDADGDATYQQNQSQNVSLSKSACSSTSETSKGSGLSLSRSEIRVKARERARERAAKEKDKEKEKENECSIAHHHHNVNNNNPMSHTATFTELLTGGIGSTVTVNPTTTSPNGSSVHQIHHDEANLFNKGRQQQHWSPAVTPMDYFSSGLLAGPSSSSARTQHQSSPVFQLGHALPISPFSGENNSDQLQHFSFMPDHLNMPPVVTSSASSSQPGGGDYNLNFSISSGLAGYNRGTLQSNSPSFLPHLQRFQPIDGSSNLPFFIGAPAPPTMDNNNNNHHHHLQFSPVFDGRLQLCYGDGTRHSDHKGKGKN 480
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g0678 480 MobiDBLite consensus disorder prediction 1 72 - -
Ssu1g0678 480 Coils Coil 213 236 - -
Ssu1g0678 480 MobiDBLite consensus disorder prediction 33 47 - -
Ssu1g0678 480 ProSiteProfiles TCP domain profile. 84 142 IPR017887 -
Ssu1g0678 480 Pfam TCP family transcription factor 83 228 IPR017887 -
Ssu1g0678 480 PANTHER TRANSCRIPTION FACTOR TCP24 1 480 - -
Ssu1g0678 480 MobiDBLite consensus disorder prediction 210 236 - -
Ssu1g0678 480 MobiDBLite consensus disorder prediction 142 236 - -
Ssu1g0678 480 ProSiteProfiles R domain profile. 209 227 IPR017888 -
Ssu1g0678 480 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 1 480 IPR005333 GO:0003700
Ssu1g0678 480 MobiDBLite consensus disorder prediction 18 32 - -
Ssu1g0678 480 MobiDBLite consensus disorder prediction 172 206 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g0678 Ssu-Chr1 15190297 15191739 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g0678 62 480 TCP Transcription Factor Family AT4G18390 45.291 1.48e-86 268
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Ssu1g0678 TCP 3.6e-41 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g0678 - - gmx:100787772 621.698