Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g0677 ATGGCTTTTGAGCCATTGGTTTGGTATTGTCAGCCGGTTGCAAATGGAGTATGGACAAAAGCAGTGGAGAATGCCTTCGGTGTTTACACTCCTTGTGCGGTTGACTCTCTGGTCATCTCCATTTCTCATTTGGTACTTCTAGGCCTGTGCATTTACCGCATATGGTTGATTAAGAACGATTTCAAAGTCAAGAGGTTCCATTTAAGGTCAAACCTTTACAATTATGTTCTGGGATTGTTAGCTTTATATTGTGCGGCAGAGCCATTATACAGATTGATCATGGGAATATCAGTTTTAAATTTAGATGGGCAGACTCAACTTGCTCCATTTGAGATAATTTCACTGATCATTGAGGCTATTGCTTGGTGCACTATGCTGATTTTGATTGGGATTGAAACTAAAGTCTACATCCGGGAATTCCGGTGGTTTGTCAGATTTGGCTTGATTTATGCTATTGTAGGGGATGCTGTAGTGTTCAATCTCATCATTTCTGTGAAGGAGTACTATAGCAGCTCTGTGCTGTATTTGTACATCAGTGAGGTGGTTGGCCAGGTTTTGTTTGGAATACTTTTGTTTGTGTATGTTCCTACTTTGGATCCTTATCCAGGTTATGCCCCCATTGGGAGTGAGATGATTACTGATGCTGCATATGCTGAACTTCCTGGAGGAGATATGATATGTCCTGAGAGGGATGCTAACGTATTGTCAAAAATAATGTTTTCTTGGATCAATCCCATCATGAAACTAGGATATGAAAGACCACTGACAGAGAAAGATGTATGGAAATTAGATACATGGGATCGGACAGAGACACTGATCAATAAGTTCCAGAAATGTTGGGTTGAGGAGTCTCGGAAGTCAAAACCTTGGCTTTtaagagcattaaatgcaagtCTTGGAGGAAGGTTTTGGTGGGGAGGCTTTTGCAAGATTGGCAATGACATTTCCCAATTTTTGGGCCCACTTATATTGAATCAGCTGCTACAGTCTATGCAAAATGGTGATCCATCCTGGAGTGGCTATGTTTATGCCTTCTCAATATTTGTTGGAGTGGTCTTTGGGGTGTTATGTGAAGCTCAATATTTTCAGAATGTCATGCGTGTTGGTTACCGGTTAAGATCAACATTGGTGGCTGCTGTGTTTCGCAAGTCTCTAAGGCTTACTCATGAAGCGCGAAAGCAATTTGCGACTGGAAAAATAACCAACTTGATGACTACTGATGCTGAGGCACTTCAGCAAATATGCCAGTCACTTCACACTTTGTGGTCAGCTCCATTTCGAATTGTTGGTGCTTTGGTTCTTCTTTACCAACAACTTGGTGTTGCTTCCCTTTTTGGTGCTTTGATGCTAGTTCTTATGTTTCCATTACAGACATTTATCATCAGCAGAATGCAGAAGTTGTCTAAGGAGGGATTACAACGTACAGACAAAAGAATTGGTCTCATGAATGAAATTTTGGCAGCTATGGACACTGTAAAATATTATGCATGGGAGAGTAGTTTCCAGTCTAAAGTACTGATTGTTCGAAATGATGAATTATCATGGTTTCGAAAAGCATCATTACTTGGAGCGtGTAATGGATTTATACTAAATAGCATTCCAGTTTTTGTAACTGTGATTACATTTGGAGTATTCACCTTGCTTGGAGGGGATCTGACACCTGCGAGAGCTTTTACATCACTTTCTCTGTTTTCTGTGCTTCGATTTCCTCTCTTCATGCTTCCTAATACTATAACTCAGGTGGTTAATGCAAATGTATCGTTGAAGCGACTAGAAGATTTACTCTTAGCAGAAGAGAGAATACTTCTTCCAAATCCACCTCTTGAGCCAAGGTTACCAGCCATCTCGATCAAGAATGGATACTTTTCTTGGGATGCGAAGgCAGAGAGGGCCACACTGTCAAACATAAATCTTGATATACCTGTTGGTTGCCTAGTTGCAGTTGTTGGCAGTACAGGAGAAGGGAAGACATCACTAGTATCTGCAATGCTTGGGGAACTTCCTCCAATGGCAGATTCAACTGTTGTTATGAGAGGAACAGTTGCTTATGTACCCCAAGTTTCGTGGATTTTTAATGCAActGTACAggataatgttttgtttggttcTGTCTTTGACCCAACAAGATATCAAAGGGCAATAAATGTGACTGAACTGCAGCATGATCTTGAGTTACTGCCGGGTGGTGATCTTACTGAAATTGGTGAAAGAGGGGTAAACATCAGTGGTGGCCAGAAGCAGAGAGTATCCATGGCTAGAGCTGTCTACTCCAATTCTGATGTGTACATCTTTGATGACCCCCTAAGTGCTCTGGATGCACATGTGGCTAGACAGGTTTTTGATAAATGCATCAAGGGGGAATTGAGAGGGAAGACCCGGGTTCTTGTTACGAATCAGCTGCATTTCCTTTCACAGGTTGATAGAATCATTTTGATCCATGAAGGTATGGTGAAGGAGGAGGGAACTTTTGAGGAACTCTCTAACCAGGGACCCCTGTTCCAAAAGCTTATGGAAAATGCGGGAAAGATGGAGGAGtatgaagaagaaaaggtaGATATTGAAACCATTGATCAGAAGCCCTCTTCAAAACCTGTGGCCAATGGAGCAATTAATGATTACGCAAAGAGTGAAAGTAAACCAAAAGAAGGAAAATCTGTCCTTATCAAACAAGAAGAACGAGAAACAGGTGTTGTCAGCTGGAATGTTCTAATGAGGTACAAGAATGCATTAGGAGGGTTTTGGGTGGTTATGGTGCTCTTTGCATGCTATATCTCAACGGAAACATTACGAATATCAAGTAGCACATGGTTAAGCCATTGGACTGATCAGAGTGGTTCAGAGGGTTATAACCCTGCCTTCTACAATATGATATATGCAGCTCTATCCTTTGGTCAGGTTTTGGTGACTTTAACAAATTCTTATTGGTTGATCATATCAAGTCTTTATGCTGCCAGAAGGTTGCACGAAACCATGCTAAGCTCCATATTACGAGCTCCCATGGTGTTTTTCCAAACAAATCCACTCGGAAGAGTTATTAACAGGTTCGCGAAGGATCTAGGTGACATTGATCGTAATGTGGCTCCATTTGTGAATATGTTTCTAGGTCAAGTGTCCCAGCTTCTTTCAACCTTCATCCTCATAGGCATTGTCAGCACAATGTCTTTGTGGGCAATACTGCcattgttggtgttgttttaCGTAGCATATCTATACTATCAGAGCACCGCTCGCGAAGTGAAGCGCTTAGACTCTATCAGCAGATCTCCTGTTTATGCACAGTTTGGAGAAGCACTGAATGGTTTATCAACAATTCGTGCTTACAAAGCGTATGATCGAATGGCAGATACAAATGGGAAATCCATGGACAACAGCATCCGATTCACCCTGGTGAGCATAAGCGGAAACCGATGGCTCGCAATCCGATTGGAAACTTTGGGAGGCATCATGATATGGTTCACTGCAACCTTTGCTGTCATACAGAACGGGAGAGCAGAGAACCAGCAAGAATTCGCATCCACCATGGGGTTACTGCTTAGCTATGCTCTGAACATTACTAGTTTGCTTACTGGTGTGCTCAGGCTTGCGAGTTTGGCCGAGAATAGTTTAAACGCGGTTGAACGGATTGGCACTTACATAGATTTGCCTCCGGAGGCTCCCTCTATCATCGATGATAATCGCCCTCCTCCTGGCTGGCCTTCTTTGGGCACAATCAGATTTGAAGATGTTGTTCTTCGCTACAGGCCTGAACTTCCTCCTGTGTTGCATGGCTTGTCTTTCACCATTTTCCCAAGTGATAAGGTTGGCATCGTTGGGAGGACAGGTGCGGGAAAATCCAGCATGCTTAATGCTTTGTTTCGAATTGTGGAATTGGAACGAGGAAGAATATTAATTGACGATTATGATATTGCAAAGTTTGGGCTAGCTGATTTGCGTAAAGTTCTTGGTATTATACCACAATCTCCCGTTCTCTTTTCAGGAACTGTGAGATTTAATCTTGATCCATTTAGTGAACACAATGATGCTGACCTCTGGGAGGCTCTGGAGAGGGCACATTTGAAGGATGTGATACGGAGGAATTCTTTGGGGCTGGATGCTGAGGTATCTGAGGCAGGCGACAACTTCAGTGTTGGACAGAGGCAACTGTTGAGTCTTTCCCGGGCTTTATTGCGTAGATCGAAGATATTAGTACTTGACGAGGCAACTGCAGCAGTTGATGTTAGAACAGATGCACTCATACAGAAAACAATTCGAGAGGAATTCAAATCCTGTACAATGCTCATTATTGCTCATCGCCTTAATACCATTATTGATTGTGATCAGATTCTTTTGCTTGGTGGTGGTAAGgtTCTTGAATATGATACCCCTGAGGAGCTGCTGTCAAATGAAGGTAGTGCTTTCTCTAAAATGGTCCAAAGCACTGGTGCTGCAAATGCCCAATACTTACGCAGCTTAGCACTTGGTGGGGACAAGTcagaaagagaagagaacaaACATCTAGATGGTCAGAGAAAATGGCTGGCTTCTTCTCGGTGGGCTGCTGCAGCCCAATTTGCTCTTGCTGTTAGTCTCACCTCATCCCAGAATGACCTACAACGATTGGAAGTGGAAGACGAGAATAGTATTCTCAAGAAGACAAAGGATGCTCTGATAACTTTGCAGGGGGTTTTGGAAAGGAAGCATGATAAAGAAATTGAGGAATCTTTAGACCGGCGCCAAATATCCCCAGAGGGATGGTGGTCATCACTTTATAAAATGATTGAAGGTCTTGCTATGATGAGCAGATTGGCCAGGAACAGGCTCCATCAATCAGACTTCGGTTTTGAGGACAGATCAATTAACTTCGATCAAGTTGATACGTAG 4860 0.4189 MAFEPLVWYCQPVANGVWTKAVENAFGVYTPCAVDSLVISISHLVLLGLCIYRIWLIKNDFKVKRFHLRSNLYNYVLGLLALYCAAEPLYRLIMGISVLNLDGQTQLAPFEIISLIIEAIAWCTMLILIGIETKVYIREFRWFVRFGLIYAIVGDAVVFNLIISVKEYYSSSVLYLYISEVVGQVLFGILLFVYVPTLDPYPGYAPIGSEMITDAAYAELPGGDMICPERDANVLSKIMFSWINPIMKLGYERPLTEKDVWKLDTWDRTETLINKFQKCWVEESRKSKPWLLRALNASLGGRFWWGGFCKIGNDISQFLGPLILNQLLQSMQNGDPSWSGYVYAFSIFVGVVFGVLCEAQYFQNVMRVGYRLRSTLVAAVFRKSLRLTHEARKQFATGKITNLMTTDAEALQQICQSLHTLWSAPFRIVGALVLLYQQLGVASLFGALMLVLMFPLQTFIISRMQKLSKEGLQRTDKRIGLMNEILAAMDTVKYYAWESSFQSKVLIVRNDELSWFRKASLLGACNGFILNSIPVFVTVITFGVFTLLGGDLTPARAFTSLSLFSVLRFPLFMLPNTITQVVNANVSLKRLEDLLLAEERILLPNPPLEPRLPAISIKNGYFSWDAKAERATLSNINLDIPVGCLVAVVGSTGEGKTSLVSAMLGELPPMADSTVVMRGTVAYVPQVSWIFNATVQDNVLFGSVFDPTRYQRAINVTELQHDLELLPGGDLTEIGERGVNISGGQKQRVSMARAVYSNSDVYIFDDPLSALDAHVARQVFDKCIKGELRGKTRVLVTNQLHFLSQVDRIILIHEGMVKEEGTFEELSNQGPLFQKLMENAGKMEEYEEEKVDIETIDQKPSSKPVANGAINDYAKSESKPKEGKSVLIKQEERETGVVSWNVLMRYKNALGGFWVVMVLFACYISTETLRISSSTWLSHWTDQSGSEGYNPAFYNMIYAALSFGQVLVTLTNSYWLIISSLYAARRLHETMLSSILRAPMVFFQTNPLGRVINRFAKDLGDIDRNVAPFVNMFLGQVSQLLSTFILIGIVSTMSLWAILPLLVLFYVAYLYYQSTAREVKRLDSISRSPVYAQFGEALNGLSTIRAYKAYDRMADTNGKSMDNSIRFTLVSISGNRWLAIRLETLGGIMIWFTATFAVIQNGRAENQQEFASTMGLLLSYALNITSLLTGVLRLASLAENSLNAVERIGTYIDLPPEAPSIIDDNRPPPGWPSLGTIRFEDVVLRYRPELPPVLHGLSFTIFPSDKVGIVGRTGAGKSSMLNALFRIVELERGRILIDDYDIAKFGLADLRKVLGIIPQSPVLFSGTVRFNLDPFSEHNDADLWEALERAHLKDVIRRNSLGLDAEVSEAGDNFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDQILLLGGGKVLEYDTPEELLSNEGSAFSKMVQSTGAANAQYLRSLALGGDKSEREENKHLDGQRKWLASSRWAAAAQFALAVSLTSSQNDLQRLEVEDENSILKKTKDALITLQGVLERKHDKEIEESLDRRQISPEGWWSSLYKMIEGLAMMSRLARNRLHQSDFGFEDRSINFDQVDT 1619
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g0677 1619 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 918 1200 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Ssu1g0677 1619 CDD ABC_6TM_ABCC_D2 916 1212 IPR044726 GO:0140359
Ssu1g0677 1619 Gene3D - 1220 1473 IPR027417 -
Ssu1g0677 1619 CDD ABCC_MRP_domain1 615 815 - -
Ssu1g0677 1619 ProSitePatterns ABC transporters family signature. 1374 1388 IPR017871 GO:0005524
Ssu1g0677 1619 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 615 839 IPR003439 GO:0005524
Ssu1g0677 1619 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 304 583 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Ssu1g0677 1619 Gene3D ABC transporter type 1, transmembrane domain 879 1218 IPR036640 GO:0005524|GO:0016021
Ssu1g0677 1619 Gene3D ABC transporter type 1, transmembrane domain 276 601 IPR036640 GO:0005524|GO:0016021
Ssu1g0677 1619 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1237 1471 IPR003439 GO:0005524
Ssu1g0677 1619 CDD ABCC_MRP_domain2 1235 1455 - -
Ssu1g0677 1619 Gene3D - 609 862 IPR027417 -
Ssu1g0677 1619 PANTHER ABC TRANSPORTER C FAMILY MEMBER 1 33 1514 - -
Ssu1g0677 1619 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 610 838 IPR027417 -
Ssu1g0677 1619 SUPERFAMILY ABC transporter transmembrane region 289 595 IPR036640 GO:0005524|GO:0016021
Ssu1g0677 1619 CDD ABC_6TM_ABCC_D1 305 591 IPR044746 GO:0140359
Ssu1g0677 1619 Pfam ABC transporter 633 768 IPR003439 GO:0005524
Ssu1g0677 1619 Pfam ABC transporter transmembrane region 917 1161 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Ssu1g0677 1619 Pfam ABC transporter transmembrane region 306 571 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Ssu1g0677 1619 ProSitePatterns ABC transporters family signature. 741 755 IPR017871 GO:0005524
Ssu1g0677 1619 Pfam ABC transporter 1254 1402 IPR003439 GO:0005524
Ssu1g0677 1619 SMART AAA_5 1263 1446 IPR003593 -
Ssu1g0677 1619 SMART AAA_5 642 825 IPR003593 -
Ssu1g0677 1619 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 33 1514 - -
Ssu1g0677 1619 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1227 1468 IPR027417 -
Ssu1g0677 1619 SUPERFAMILY ABC transporter transmembrane region 914 1217 IPR036640 GO:0005524|GO:0016021
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g0677 Ssu-Chr1 15116061 15136930 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g0677 607 831 Calmodulin-binding Proteins AT2G36910 27.615 3.22e-22 102
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g0677 - - gmx:100795004 2959.09
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g0677 1 15116061 15136930 Ssu1g0677 1 15116061 15136930 ECH