Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g0676 ATGTTAATGGAGAGTGGTGGACGCGATTCTGGGATGAGTTCAGAGACTGTGAATTCCACCCAACGAACTTCAATGAGCAACGAAAGCGTTTGCAGCACCAGCTTCAGCCGCCTCTCCTTCGACCTTCCTCCGTCGTCCTCTTCGCCGGAGAGCCTCTTCGTGAAACCGCACCGCTCCTCGGACTTCGCCTACTCCGCCATCTTCCGGCGCAAGGCCGCTCTCACCTTCCGCGACTTCCACCTGCTCCGCCGCATCGGCGCCGGCGACATCGGGACGGTGTACCTGTGCCGGCTCCGCGAGGGGGAGTTGGACGAGGACCCCGCGTGCCTGTACGCGATGAAGGTGGTGGACAAGGAGGCGGTGGCGCTGAAGAAGAAGGCGCAGAGGGCGGAAATGGAGAGGAAGATTCTGAAGATGGTGGACCACCCGTTCCTCCCTACGCTCTACGCGGAGTTCGAGGCCTCGCATTTCTCTTGCATTGTGATGGAGTATTGTTGCGGTGGGGACTTGCACTCCCTCCGACACAACCATCCCAACAAGCGCTTCTCTTGCTCCTCCGCCAGGTTTTACGCGGCTGAAGTACTGGTGGCGTTGGAGTATCTCCACATGCTGGGAATCATCTACAGGGATCTAAAGCCGGAAAACGTGTTGGTCAGATCAGACGGTCACATCATGCTTTCTGATTTTGATCTCTCTCTATGCTCCGACGCAGTCCCGGCCGTCGAATCCCCTGACTGTTCGCTAGATCCCGCATTCCCACCCGCCTTACCCTACACTCGCCAGTACTCCACCCCGTTCTCGTGCCTCTCGAACCGCGTGTTCCGGTCCAGGAAGGTGCAGACCCTTCAACCGAACCGGCTCTTCGTGGCCGAACCGGTTGGGGCCCGTTCGTGCTCCTTCGTGGGGACGCACGAGTACGTGTCGCCGGAGGTGGCCTCGGGGAACTCCCACGGTAACGCCGTGGACTGGTGGTCGTTCGGGATATTCGTCTACGAGATGGTGTACGGTCGCACACCCTTCGCGGGCCCATCGAACGAGGCTACGCTGCGCAACATCATAAAAAGGCCCCTCGCCTTTCCCACCGCCACGCCCTCGAGCACGCTTGAAATGCACGCGCGGGACCTCATCTCCGGGTTGCTCAACAAGGACCCGAACCGCAGGCTCGGGTCGAAGCGGGGCGCCGCGGACGTTAAGAAGCACCCCTTCTTCGCGGGACTCAATCTGGCGCTCATACGAATGGTCACGCCGCCGGAGGTTCCGTCACTCAGGAGGCACAAAACGACGCCGTTGTACCCCGCTCACGATAACGGCAGCTTAAATAACAGTAGACAGCAGCTAACGCCCTTTGATTACTTTTGA 1359 0.5975 MLMESGGRDSGMSSETVNSTQRTSMSNESVCSTSFSRLSFDLPPSSSSPESLFVKPHRSSDFAYSAIFRRKAALTFRDFHLLRRIGAGDIGTVYLCRLREGELDEDPACLYAMKVVDKEAVALKKKAQRAEMERKILKMVDHPFLPTLYAEFEASHFSCIVMEYCCGGDLHSLRHNHPNKRFSCSSARFYAAEVLVALEYLHMLGIIYRDLKPENVLVRSDGHIMLSDFDLSLCSDAVPAVESPDCSLDPAFPPALPYTRQYSTPFSCLSNRVFRSRKVQTLQPNRLFVAEPVGARSCSFVGTHEYVSPEVASGNSHGNAVDWWSFGIFVYEMVYGRTPFAGPSNEATLRNIIKRPLAFPTATPSSTLEMHARDLISGLLNKDPNRRLGSKRGAADVKKHPFFAGLNLALIRMVTPPEVPSLRRHKTTPLYPAHDNGSLNNSRQQLTPFDYF 452
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g0676 452 Gene3D Phosphorylase Kinase; domain 1 79 427 - -
Ssu1g0676 452 Gene3D Transferase(Phosphotransferase) domain 1 169 421 - -
Ssu1g0676 452 PANTHER FLIPPASE KINASE 1-RELATED 3 450 - -
Ssu1g0676 452 PANTHER SERINE/THREONINE KINASE FAMILY PROTEIN 3 450 - -
Ssu1g0676 452 ProSiteProfiles Protein kinase domain profile. 79 403 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu1g0676 452 CDD STKc_phototropin_like 77 424 - -
Ssu1g0676 452 MobiDBLite consensus disorder prediction 421 452 - -
Ssu1g0676 452 SMART serkin_6 79 403 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu1g0676 452 MobiDBLite consensus disorder prediction 433 452 - -
Ssu1g0676 452 MobiDBLite consensus disorder prediction 1 28 - -
Ssu1g0676 452 Pfam Protein kinase domain 79 232 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu1g0676 452 Pfam Protein kinase domain 298 403 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu1g0676 452 SUPERFAMILY Protein kinase-like (PK-like) 59 428 IPR011009 -
Ssu1g0676 452 Coils Coil 113 133 - -
Ssu1g0676 452 MobiDBLite consensus disorder prediction 9 28 - -
Ssu1g0676 452 ProSitePatterns Serine/Threonine protein kinases active-site signature. 206 218 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g0676 Ssu-Chr1 15086954 15089707 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g0676 1 452 AGC Kinase Gene Family AT2G34650 65.870 0.0 585
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_RSK-2 Ssu1g0676 Pkinase 8.9e-34 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g0676 - - gmx:100795536 790.801
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g0676 1 15086954 15089707 Ssu1g0676 1 15086954 15089707 ECH