Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g0659 ATGAGACTTTCTTCAGCTGGTTTTAGTTCTCCACCCCAGGAAGGGGAAAGGCGAGTTCTAGATTCAGAACTGTGGCATGCATGTGCTGGTCCCCTTGTCTCTTTACCAGCAGTTGGAAGCCGCGTGGTATACTTTCCACAAGGTCACAGTGAACAGGTGGCTGTGTCGACTAACAAGGAAGTAGATGCTCATATCCCAAACTATCCAAGCTTGCCTCCTCAACTCATTTGTCAACTTCATAATATGACTATGCATGCTGATGCTGAGACTGATGAAGTGTACGCACAGATGACCTTGCAACCGCTGAATCCTCAAGAGCAAAAGGAGGCATACCTGCCAGCGGAGTTGGGCACTCCCAGTAAGCAGCCAACAAActatttttgcaaaactttgaCTGCAAGTGACACGAGCACTCACGGGGGATTTTCTGTACCTCGCCGGGCAGCTGAAAAAGTGTTTCCTCCATTGGATTTCTCCCAACAGCCTCCTGCTCAAGAATTAATTGCAAGGGATTTGCATGGTAATGAATGGAAATTCAGACATATCTTTCGGGGCCAGCCCAAAAGACATCTACTTACAACTGGATGGAGTGTCTTTGTGAGTGCTAAAAGACTTGTTGCTGGTGATTCTGTGCTGTTTATATGGAATGAAAAGAACCAACTGCTTCTTGGCATCCGCCGTGCTAATCGACCACAAACTGTGATGCCTTCTTCAGTGTTGTCAAGTGATAGTATGCACTTGGGCCTTCTTGCTGCGGCAGCTCATGCAGCTGCAACAAATAGTCGTTTCACCATTTTCTATAATCCACGTGCTAGCCCATCAGAATTTGTCATACCCTTAGCCAAGTATGTTAAAGCTGTGTATCATACTCGAGTTTCAGTTGGTATGCGTTTCAGGATGCTGTTTGAAACAGAGGAGTCAAGTGTGCGGCGATACATGGGTACAATAACTGGCATTAGTGACCTGGATCCTGTCCGGTGGCCAAACTCACATTGGCGCTCAGTCAAGGTTGGCTGGGATGAATCCACTGCTGGAGAGAGGCAACCTAGAGTGTCTCTATGGGAAATTGAGCCATTAACTACATTTCCTATGTATCCATCCCCATTCCCTCTTAGGCTTAAACGACCATGGCCTCCAGGACTGCCTTCATTCCACGGTGAGCTTTCTTGCTGCCATTAG 1179 0.4665 MRLSSAGFSSPPQEGERRVLDSELWHACAGPLVSLPAVGSRVVYFPQGHSEQVAVSTNKEVDAHIPNYPSLPPQLICQLHNMTMHADAETDEVYAQMTLQPLNPQEQKEAYLPAELGTPSKQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDFSQQPPAQELIARDLHGNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFIWNEKNQLLLGIRRANRPQTVMPSSVLSSDSMHLGLLAAAAHAAATNSRFTIFYNPRASPSEFVIPLAKYVKAVYHTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPVRWPNSHWRSVKVGWDESTAGERQPRVSLWEIEPLTTFPMYPSPFPLRLKRPWPPGLPSFHGELSCCH 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g0659 392 Gene3D - 125 228 IPR015300 -
Ssu1g0659 392 ProSiteProfiles B3 DNA-binding domain profile. 127 229 IPR003340 GO:0003677
Ssu1g0659 392 SUPERFAMILY DNA-binding pseudobarrel domain 112 256 IPR015300 -
Ssu1g0659 392 Gene3D - 291 363 - -
Ssu1g0659 392 Pfam Auxin response factor 253 336 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Ssu1g0659 392 CDD B3_DNA 126 227 IPR003340 GO:0003677
Ssu1g0659 392 Pfam B3 DNA binding domain 127 228 IPR003340 GO:0003677
Ssu1g0659 392 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 1 388 IPR044835 GO:0003677|GO:0006355|GO:0009725
Ssu1g0659 392 SMART B3_2 127 229 IPR003340 GO:0003677
Ssu1g0659 392 PANTHER AUXIN RESPONSE FACTOR 6 1 388 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g0659 Ssu-Chr1 14840135 14844072 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g0659 1 386 B3 DNA Binding Superfamily AT1G30330 93.557 0.0 740
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Ssu1g0659 B3 5e-23 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g0659 - - gmx:100798719 775.393