Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g0657 ATGCCTAAGCAAATCCACGAGATTAAGGATTTCCTTCTCACTGCCAGAAGGAAGGATGCGAGGTCGGTGAAGATCAAGAGGAGCAGAGATGTGGTTAAGTTCAAGGTCCGATGCTCGAAGTACCTCTACACACTTTGTGTGTTTGACCCAGAGAAAGCTGATAAATTGAAGCAATCACTTCCTCCAGGTcctaagaaaattttatattctgcTCGTGTTTCCTTGCCCATGCAGCAATATTCGTCTCACCAAGCTGCACACCAAGGGCCTGAATCTCTCCTCCTCTTGAGCTTCAAATCTTCTTCAGACAACCTTTTTTTGGTGTTTTCAACTGGAAACTGTGAATCCTCGACAATGATGTTGTTCATAAGTGTTGTAGCAGATCTTATCCCAGGAATGGCTTCATCACAAGAGCATCTATCTGAGGCAAGTAAACTGCACTTCACTAATTCAGCTGCCTTAAGCCTTGAAGGGGAAGTTCTGGTTGAGTTACAGTTGGATCCATCCTTCTTCCTGTGA 519 0.4297 MPKQIHEIKDFLLTARRKDARSVKIKRSRDVVKFKVRCSKYLYTLCVFDPEKADKLKQSLPPGPKKILYSARVSLPMQQYSSHQAAHQGPESLLLLSFKSSSDNLFLVFSTGNCESSTMMLFISVVADLIPGMASSQEHLSEASKLHFTNSAALSLEGEVLVELQLDPSFFL 172
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g0657 172 PANTHER 60S RIBOSOMAL PROTEIN L38 1 63 IPR002675 GO:0003735|GO:0005840|GO:0006412
Ssu1g0657 172 Pfam Ribosomal L38e protein family 2 66 IPR002675 GO:0003735|GO:0005840|GO:0006412
Ssu1g0657 172 Gene3D - 1 67 IPR038464 -
Ssu1g0657 172 PANTHER 60S RIBOSOMAL PROTEIN L38 1 63 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g0657 Ssu-Chr1 14824756 14831360 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g0657 1 63 Cytoplasmic Ribosomal Protein Gene Family AT3G59540 93.651 3.34e-39 126
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g0657 K02923 - gmx:100305707 130.183