Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g0651 ATGCTCAGAGAGAAAAGGGAGAAAGCATTAAAAATGACGAAGTTTAGTTCAAGTTATAGTACTTCTGATTTCGTTTATTGTGGGCTTCTACTCCCCTTTCTTCTGTTATCCCATATCTCCTTTCAACTTGCATCCTGTGGCTCCACAGTTAAGTTCCTTCCTGGATTCGAGGGACCCCTTCCTTTTGTTCTTGAAACCGGGTATGTGGGAGTGGGTGAATCAGAGGATGTGCAGGCTTTCTACTACTTCATTGAGTCAGAGAACAATCCCAAGGAGGATCCTCTCATGCTTTGGCTCACCGGTGGCCCTGGTTGCTCAGCCTTGTCTGGCCTTGTCTTTGAAATAGGCCCACTTGCATTTAAATACGAGGAATATAATGGGAGCCTGCCTAATTTGGTCTCGAGACCACACTCATGGACAAAGGTTAGTAGCATTATATTTGTAGACTTGCCTGTTTCCACGGGCTTCACTTATGCTAGAGCAGAGTTTTCTGCTCAACGAAGCGACTGGATACTAGTTCACCAAGTCCATCAATTTCTTAGGAAGTGGTTGATTGATCATCCAAAATTTTTGTCGAATGAAGTCTACATTGGTGGCGATTCATACTCTGGCATTCCTATTCCAGTAATTGTTCAAGAAATTTCTCAAGGGAATGAAAAAGGGGTCCAACCATGGATAAATCTCCAGGGATACCTGCTGGGGAATGCAGCAACAACTAGAAGAGAAGGAAACTATGCAATCCCCTTTGCTCATGGAATGGGACTTATTTCTGATGAACTACACGAGTCTctgcaaaaaaattgtaaaggaGAGTACATAAATGTGGACACCAGAACTGTATTATGTAATAGAGATATTGAGTCATTCAATGAGGCCACATCAGGACTTAACAAGGCATATATTTTGGACCCGTCATGTCCGTGGGTTGATACCGAAGCATCTTGGAGGAGATCTCTAATTAAGAAATATCCCGGGAAGAATTTCCTGAAGACTCATCTCAAATTGCCAGCCTTAAGCTGTCGGAGTTATACATACTTCCTATGCGGTTATTGGGCCAATGATGATAATGTTCGCAGTGCACTGCATATCCGTAAGGGAAGTGTAGGAAAATGGCATCGCTGTACCTTCAATATACCTAACAAGGAGGATATCCCAAGCAGCTATGAGTATCATGTAAATCTCAGTAGAAAAGGCTATCGTTCACTGATATACAgTGGCGATCATGACATGCAAGTTCCTTTCTTGGCAACTCAAGCATGGATAAGATCTTTAAACTACTCCATTGTGGATGATTGGAGGCAATGGCATACAGATGGCCAAGTTGCAGGATACATGAGGACTTACTCCAATCGTATGACATTTGCAACTGTGAAGGGTGGAGGCCACACAGCTCCGGAGTACAAGCCTGAAGAATGCTTTGCCATGTACAGTAGGTGGATATCTAACAGGGCTTTGTAG 1458 0.4273 MLREKREKALKMTKFSSSYSTSDFVYCGLLLPFLLLSHISFQLASCGSTVKFLPGFEGPLPFVLETGYVGVGESEDVQAFYYFIESENNPKEDPLMLWLTGGPGCSALSGLVFEIGPLAFKYEEYNGSLPNLVSRPHSWTKVSSIIFVDLPVSTGFTYARAEFSAQRSDWILVHQVHQFLRKWLIDHPKFLSNEVYIGGDSYSGIPIPVIVQEISQGNEKGVQPWINLQGYLLGNAATTRREGNYAIPFAHGMGLISDELHESLQKNCKGEYINVDTRTVLCNRDIESFNEATSGLNKAYILDPSCPWVDTEASWRRSLIKKYPGKNFLKTHLKLPALSCRSYTYFLCGYWANDDNVRSALHIRKGSVGKWHRCTFNIPNKEDIPSSYEYHVNLSRKGYRSLIYSGDHDMQVPFLATQAWIRSLNYSIVDDWRQWHTDGQVAGYMRTYSNRMTFATVKGGGHTAPEYKPEECFAMYSRWISNRAL 485
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g0651 485 PRINTS Carboxypeptidase C serine protease (S10) family signature 183 208 IPR001563 GO:0004185|GO:0006508
Ssu1g0651 485 PRINTS Carboxypeptidase C serine protease (S10) family signature 452 465 IPR001563 GO:0004185|GO:0006508
Ssu1g0651 485 PRINTS Carboxypeptidase C serine protease (S10) family signature 148 158 IPR001563 GO:0004185|GO:0006508
Ssu1g0651 485 PRINTS Carboxypeptidase C serine protease (S10) family signature 135 147 IPR001563 GO:0004185|GO:0006508
Ssu1g0651 485 Gene3D alpha/beta hydrolase 59 485 IPR029058 -
Ssu1g0651 485 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 26 484 IPR001563 GO:0004185|GO:0006508
Ssu1g0651 485 SUPERFAMILY alpha/beta-Hydrolases 50 483 IPR029058 -
Ssu1g0651 485 Pfam Serine carboxypeptidase 54 482 IPR001563 GO:0004185|GO:0006508
Ssu1g0651 485 PANTHER 1-O-ACYLGLUCOSE:ANTHOCYANIN ACYLTRANSFERASE 26 484 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g0651 Ssu-Chr1 14789581 14793693 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g0651 44 73 Calmodulin-binding Proteins AT2G22960 73.333 1.53e-08 52.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g0651 K16296 - gmx:100794342 876.7