Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g0650 ATGGCACACAACACGGAGGTGCCACCTTCCACGTCTTCACAACATCGTCATGAAGGAGACAAAGCCAACCAAAAAGTTCCCTTCTACATGCTTTTCACTTTCGCGGATCGTCTCGACGTGGCATTGATGACCATAGGCACGATCTGTGCCGTCGCTAATGGGCTGTCGCAGCCTCTCATGTCCGTCATTTTGGGGAAGCTCATCAACACCTTTGGCTCCACCGATCCATCAAATACTATTAAGGAAGTTTCTAAgGTTGCGTTATTGTTTGTTTACCTGGCTATTGGGACTGGAATTGCGTCGTTCCTTCAGGTAGCATGTTGGATAGTGACAGGAGAAAGACAAGCCGCAAGGATCCGTGGCTTGTACTTGAAAACTATATTGAAGCAGGACATTGCTTTCTTTGACACTGAAACAACAACTGGTGAGGTGATTGGGAGAATGTCTGGTGACACCATTCTCATTCAAGATGCTATGGGAGAAAAGTTTATACAACTTGCTTCAACTTTTTTTGGTGGCTTTGTGATTGCCTTTATAAGAGGATGGAATCTCGCTGTTGTTTTGCTCGCAAGTATACCATGTGTTGTTGTTACTGGTGGAGTTTTGTCCCTGTTGATAACTAAAATGTCAAGTCGTGGGCAGGCTGCTTATGCAGAAGCAGGAAATGTTGTTGAACAAACCGTGGGAGCTATTAGAACAGTGGCATCCTTCACTGGCGAGAAAAAAGCAATAGAAAAGTATAATAGCAAGTTAAAGGTTGCTTATAAAACAATGGTTCAACAAGGGATGGCCTCGGGGTTAGGAATGGGAGCACTTCTGTTGATTATCTTCTGCACCTATGCACTTGCCATGTGGTATGGTTCTAAACTTGTCGTTGAGAAAGGATACAATGGTGGAACTGTCATCACAGTAATCGTGGCTCTTATGACTGGTGGAATGTCACTTGGTCAAACATCCCCAAGCCTAAATGCATTTGCAGCAGGCCAAGCAGCAGCATATAAGATGTTTGAGACAATTAAAAGGAAGCCAAAAATTGATGCTTATGACACCAGTGGTGTTGTCTTGGAAGACATAGAGGGAAGTATTGAACTTAAGGATGTTTACTTTAGATACCCTGCAAGACCAGATGTGCAGATCTTCTCTGGATTCTCATTGTATGTTCCCAGTGGCACAACTGCTGCTTTAGTGGGTCAAAGTGGTAGTGGGAAGTCCACTGTAATCAGTTTATTAGAAAGATTCTATGATCCTGATGCTGGAGAAGTACTCATAGATGGTgtgaatttgaagaattttcaaGTTAGATGGATAAGAGAACAAATTGGGCTGGTTAGTCAAGAACCTATCCTGTTTGCAGCTAGTATCAAAGACAACATAGCCTATGGAAAAGAAGGTGCAACTGATGAGGAAATAAAAACAGCAATAACACTTGCCAATGCCAAAAAGTTCATTGACAAGCTGCCTCAGGGCCTTGAGACAATGGCAGGCCAGAATGGGACTCAACTTTCTGGTGGGCAAAAGCAAAGAATTGCAATTGCAAGGGCAATTTTGAAGAACCCAAGAATCCTTCTTCTCGATGAAGCAACGAGTGCATTGGATGCTGAGTCTGAACGTGTTGTTCAGGAAGCATTAGAACAAGTTATGTCAAAAAGGACTACTGTAGTTGTTGCGCATCGCTTGACAACTATTAGAAATGCTGAAACCATAGCAGTGGTTCATGAAGGCAAAATTGTGGAGCAAGGAACTCATGATGAGTTAATCAAGGATGTTGATGGTGCTTATTCTCAGCTTATTCGTCTACAAGAAGGAGCCAAGGAAGCTGAAGGTAGCCATAATTCTGAAGCAGAGAAGTCAAGTAACAGTTTTAATTTAGATAGTCACATGTCCAGATCTTCCTCCCGGAGAGCATCCCTTGTGAGATCAATAAGCAGAGGTTCATCAGGTAGACACTCCCAGTCACATAGCTTTGCTCTTTCTCATCGAAGTGGAGTACATGGATATGGAGAAATAGCAGATGGGGATATTGAAAAAAGTGAAGTTGATACTAAGAAGCCCAAGAAGGTTTCTTTAAGCCGTTTGGCCTACTTAAACAAGCCTGAAGTTCCTGTCTTAGTGCTTGGATCCATTGCTGCATTAGTACAAGGTGTTGTGTTCCCTATGTTTGGCTTATTGTTTTCCTCAGCAATAACAATGTTCTTTGAACCTCCAGAAAAACAGCGGAAAGATTCTAGGTTCTGGTCACTTCTATATGTGGGTTTGGGTTTAGTTACTCTAGTGACAATACCAGCGCAGAATTACTTCTTTGGCATTGCTGGTGGAAAATTAATCGAAAGAATTCGTTCACTGACATTTGAAAAAGTTGTGCACCAAGAAATCAGTTGGTTTGATGATCCTGCAAATTCAAGTGGTGCAGTTGGTGCAAGGTTATCTACTGATGCTTCAACAGTGAAAACTCTAGTTGGTGACACATTGGCCCTGATTGTGCAAAACATGTCAACAATCACAGCAGGTCTAGTTATAGCATTCACTGCTAATTGGATTCTTGCTATCATAATTCTGGCCGTGTCACCCTTGGTCCTTATGCAAGGAATCCTTCAGATGAAGTTTCTTAAAGGATTCAGTGCAGATGCCAAGGTGAAGTATGAAGAGGCAAGTCAGGTGGCAAATGATGCTGTTGGTAGCATCAGAACCATTGCATCATTTTGTGCTGAATCGAAGGTGATGGATATGTACGGGAAGAAATGTTTAGAGCCAGAAAAACAAGGTGTTCGGTCGGGGCTTGTTAGTGGTGCGGGATTTGGTTTCTCTTTTTTGGCTCTATACTGCACAAATGCTTTCTGTTTCTACATAGGATCTGTTCTTGTGCAACATGGGAAAGCAACTTTTCCAGAGGTTTTCAAGgttttcttttgtttaacaatCACTGCAGTGGGCGTTTCCCAGACTAGTGCCTTGGCACCAGACACTAACAAAGCCAAAGATTCCACAGCTTCAATATTTGAAATCCTTGACAGTAGACCCATCATTGACTCCAGCAGCAATGAGGGTAGAACACTACAAGCTGTTACTGGTGATATTGAACTTCAACATGTCAATTTCAATTACCCAACTAGGCctacatattcaaattttcaaagatttACTGTTGCCTTGGTTGGAGAAAGTGGAAGTGGAAAATCAACAGTGATCAGCCTCTTGGAGAGATTTTATAACCCTGATACCGGACGTATACTACTAGATGGAGTGGATATAAAAGAGTTCAGACTGAGCTGGTTGAGGCAGCAAATGGGTTTGGTTGGTCAGGAGCCCATTCTTTTCAATGAAAGTATTCGTGCCAACATAGCTTACGGCAAAGAGGGAGGTGCCACAGAAGAAGAGATAATTGCAGCAGCTAAAGCATCCAATGCACACAACTTTATAAGTTCTCTTCCAAATGGTTATGACACCTCAGTTGGAGAAAGAGGCACACAATTGTCAGGAGGACAAAAGCAGCGTATAGCCATTGCAAGAGCCATGCTGAAAGACCCCAAAATCCTTTTGCTTGATGAGGCAACTAGTGCACTTGATGCAGAGTCAGAGCACATAGTTCAAGAGGCTCTAGATAGAGTTAGTGTGGACAGAACAACTGTAGTGGTAGCTCACCGTCTTACAACAATTAGAGGCGCCGACATCGTAGCAGTAATAAAAAATGGGGTGGTCGTTGAAAAGGGAAAACATGATGTGTTGATGAAGATTACTGATGGAGTTTATGCTTCATTGGTAGCTCTACATATGAGTGCATCTTAA 3783 0.4206 MAHNTEVPPSTSSQHRHEGDKANQKVPFYMLFTFADRLDVALMTIGTICAVANGLSQPLMSVILGKLINTFGSTDPSNTIKEVSKVALLFVYLAIGTGIASFLQVACWIVTGERQAARIRGLYLKTILKQDIAFFDTETTTGEVIGRMSGDTILIQDAMGEKFIQLASTFFGGFVIAFIRGWNLAVVLLASIPCVVVTGGVLSLLITKMSSRGQAAYAEAGNVVEQTVGAIRTVASFTGEKKAIEKYNSKLKVAYKTMVQQGMASGLGMGALLLIIFCTYALAMWYGSKLVVEKGYNGGTVITVIVALMTGGMSLGQTSPSLNAFAAGQAAAYKMFETIKRKPKIDAYDTSGVVLEDIEGSIELKDVYFRYPARPDVQIFSGFSLYVPSGTTAALVGQSGSGKSTVISLLERFYDPDAGEVLIDGVNLKNFQVRWIREQIGLVSQEPILFAASIKDNIAYGKEGATDEEIKTAITLANAKKFIDKLPQGLETMAGQNGTQLSGGQKQRIAIARAILKNPRILLLDEATSALDAESERVVQEALEQVMSKRTTVVVAHRLTTIRNAETIAVVHEGKIVEQGTHDELIKDVDGAYSQLIRLQEGAKEAEGSHNSEAEKSSNSFNLDSHMSRSSSRRASLVRSISRGSSGRHSQSHSFALSHRSGVHGYGEIADGDIEKSEVDTKKPKKVSLSRLAYLNKPEVPVLVLGSIAALVQGVVFPMFGLLFSSAITMFFEPPEKQRKDSRFWSLLYVGLGLVTLVTIPAQNYFFGIAGGKLIERIRSLTFEKVVHQEISWFDDPANSSGAVGARLSTDASTVKTLVGDTLALIVQNMSTITAGLVIAFTANWILAIIILAVSPLVLMQGILQMKFLKGFSADAKVKYEEASQVANDAVGSIRTIASFCAESKVMDMYGKKCLEPEKQGVRSGLVSGAGFGFSFLALYCTNAFCFYIGSVLVQHGKATFPEVFKVFFCLTITAVGVSQTSALAPDTNKAKDSTASIFEILDSRPIIDSSSNEGRTLQAVTGDIELQHVNFNYPTRPTYSNFQRFTVALVGESGSGKSTVISLLERFYNPDTGRILLDGVDIKEFRLSWLRQQMGLVGQEPILFNESIRANIAYGKEGGATEEEIIAAAKASNAHNFISSLPNGYDTSVGERGTQLSGGQKQRIAIARAMLKDPKILLLDEATSALDAESEHIVQEALDRVSVDRTTVVVAHRLTTIRGADIVAVIKNGVVVEKGKHDVLMKITDGVYASLVALHMSAS 1260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g0650 1260 SMART AAA_5 1044 1237 IPR003593 -
Ssu1g0650 1260 SMART AAA_5 389 581 IPR003593 -
Ssu1g0650 1260 MobiDBLite consensus disorder prediction 613 655 - -
Ssu1g0650 1260 Gene3D ABC transporter type 1, transmembrane domain 683 992 IPR036640 GO:0005524|GO:0016021
Ssu1g0650 1260 Gene3D ABC transporter type 1, transmembrane domain 993 1014 IPR036640 GO:0005524|GO:0016021
Ssu1g0650 1260 Pfam ABC transporter transmembrane region 704 975 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Ssu1g0650 1260 Pfam ABC transporter transmembrane region 43 311 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Ssu1g0650 1260 Pfam ABC transporter 382 529 IPR003439 GO:0005524
Ssu1g0650 1260 ProSitePatterns ABC transporters family signature. 1157 1171 IPR017871 GO:0005524
Ssu1g0650 1260 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 21 1257 IPR039421 -
Ssu1g0650 1260 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 45 327 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Ssu1g0650 1260 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 352 600 IPR027417 -
Ssu1g0650 1260 Gene3D - 352 601 IPR027417 -
Ssu1g0650 1260 Gene3D - 1015 1256 IPR027417 -
Ssu1g0650 1260 CDD ABC_MTABC3_MDL1_MDL2 1025 1253 - -
Ssu1g0650 1260 SUPERFAMILY ABC transporter transmembrane region 31 346 IPR036640 GO:0005524|GO:0016021
Ssu1g0650 1260 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1020 1254 IPR003439 GO:0005524
Ssu1g0650 1260 MobiDBLite consensus disorder prediction 1 20 - -
Ssu1g0650 1260 CDD ABC_6TM_Pgp_ABCB1_D1_like 43 323 - -
Ssu1g0650 1260 Gene3D ABC transporter type 1, transmembrane domain 30 619 IPR036640 GO:0005524|GO:0016021
Ssu1g0650 1260 ProSitePatterns ABC transporters family signature. 501 515 IPR017871 GO:0005524
Ssu1g0650 1260 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 362 598 IPR003439 GO:0005524
Ssu1g0650 1260 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1015 1255 IPR027417 -
Ssu1g0650 1260 CDD ABC_MTABC3_MDL1_MDL2 362 600 - -
Ssu1g0650 1260 CDD ABC_6TM_Pgp_ABCB1_D2_like 693 1008 - -
Ssu1g0650 1260 Pfam ABC transporter 1047 1185 IPR003439 GO:0005524
Ssu1g0650 1260 PANTHER ABC TRANSPORTER B FAMILY PROTEIN 21 1257 - -
Ssu1g0650 1260 MobiDBLite consensus disorder prediction 602 655 - -
Ssu1g0650 1260 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 704 990 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Ssu1g0650 1260 SUPERFAMILY ABC transporter transmembrane region 685 1006 IPR036640 GO:0005524|GO:0016021
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g0650 Ssu-Chr1 14761938 14767599 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g0650 1 1256 Calmodulin-binding Proteins AT2G36910 43.809 0.0 1028
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g0650 K05658 - gmx:100801771 2078.14