Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g0645 atggTCGTGGAAGATGCCCAAAAATCAACCATCACGGAGGACcaaaaccctaaccctaaccctaacccCAGCAGTGTAGCgaacgacgacgacgacgacgatcTCGAAGAGGGAGAGATCCTCGACGACGGGGACGACGGCTCCGCCGCCTCCAAACCTCCGGCCGCCCTCCTCCACCACCCCCACCCTCTCGAGAATTCGTGGACCTTCTGGTTCGACAACCCCTTCGCCAAGTCCAAACAAGCCGCATGGGGCAGCTCCATCCGACCCGTCTACACTTTCGCCACCGTCGAAGAATTTTGGAGCATTTTCAATAACATTCACCACCCGAGCAAGTTGGCCGGCGGGGCGGACTTTCATTGCTTCAAGGACAAGATTGAGCCCAAGTGGGAGGACCCTATCTGCGCTAATGGGGGCAAATGGACTATGACGTTCCAAAAGGGAAAATCTGATACCAGTTGGTTGTATACGTTGTTGGCAATGATCGGAGAACAGTTTGATCACGGAGATGAAATTTGCGGAGCTGTTGTGAATGTCAGAAATAGGCAGGATAAAATTGCTCTTTGGACTAAGAATGCTTCAAATGAGGCTGCTCAGATGAGCATTGGAAAGCAGTGGAAGGAGTTTCTTGATTACAATGAAACGATTGGCTTTATATTTCATGAGGATGCAAAGAAGCTTGACAGAGCTGCTAAAAATAAGTACGTCATATGA 714 0.4622 MVVEDAQKSTITEDQNPNPNPNPSSVANDDDDDDLEEGEILDDGDDGSAASKPPAALLHHPHPLENSWTFWFDNPFAKSKQAAWGSSIRPVYTFATVEEFWSIFNNIHHPSKLAGGADFHCFKDKIEPKWEDPICANGGKWTMTFQKGKSDTSWLYTLLAMIGEQFDHGDEICGAVVNVRNRQDKIALWTKNASNEAAQMSIGKQWKEFLDYNETIGFIFHEDAKKLDRAAKNKYVI 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g0645 237 ProSitePatterns Eukaryotic initiation factor 4E signature. 118 141 IPR019770 GO:0003723|GO:0003743|GO:0005737|GO:0006413
Ssu1g0645 237 SUPERFAMILY eIF4e-like 57 232 IPR023398 -
Ssu1g0645 237 MobiDBLite consensus disorder prediction 1 58 - -
Ssu1g0645 237 Gene3D RNA Cap, Translation Initiation Factor Eif4e 55 237 IPR023398 -
Ssu1g0645 237 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4E-1 1 237 - -
Ssu1g0645 237 MobiDBLite consensus disorder prediction 8 26 - -
Ssu1g0645 237 Pfam Eukaryotic initiation factor 4E 63 215 IPR001040 GO:0003723|GO:0003743|GO:0006413
Ssu1g0645 237 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4E RELATED 1 237 IPR001040 GO:0003723|GO:0003743|GO:0006413
Ssu1g0645 237 MobiDBLite consensus disorder prediction 27 44 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g0645 Ssu-Chr1 14620832 14622727 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g0645 1 236 Eukaryotic Initiation Factors Gene Family AT4G18040 67.782 7.07e-113 321
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g0645 K03259 - gmx:100793288 388.652
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g0645 1 14620832 14622727 Ssu1g0645 1 14620832 14622727 ECH