Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g0636 ATGGCTTTTCCAAACCCATCCATGTCAGTTTCTCCACAGAGGAAGATGGGAAGGGGGAAGATTGAGATCAAGCGGATTGAGAACACCACCAATCGCCAAGTCACCTTCTGCAAGCGAAGAAATGGCCTGCTCAAGAAAGCATATGAATTATCTGTGCTTTGTGATGCAGAGGTTGCTCTAATTGTCTTCTCTACCCGTGGCCGCCTCTACGAATATGCCAATAACAGTGTCAAAACAACTATTGAGAGGTACAAAAAAGCATGTTCAGATTCGTCTGGTGCTGGATCTGCTTCTGAGGCTAATGCTCAGTTTTACCAGCAAGAAGCAGATAAACTTCGTGCACAAATTAGTAACCTGCAGAATAACAACAGGCAAATGATGGGTGAGTCTCTGGGCTCTATGAGTGCCAAGGAACTCAAAAACCTGGAGACTAAATTAGAAAAAGGAATTAGTAGGATTCGTTCAAAAAAGAACGAGCTGCTATTTGCTGAAATTGAGTACATGCAGAAGAggGAGATAGACTTGCACAACAACAACCAGCTTCTTCGAGCAAAGATAGCAGAAGGTGAGAGGAGCCACAATAACATGGCTGTGTTGCCCGGAGGCTCAAACTATGACTCTATGCAGTCTCAGCAGCAATTTGACTCTCGTGGCTACTTCCAAGTGACTGGATTACAACCCAATAATCAGTATGCACGGCAAGATCAGATGTCCCTTCAATTAGTATGA 729 0.439 MAFPNPSMSVSPQRKMGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSTRGRLYEYANNSVKTTIERYKKACSDSSGAGSASEANAQFYQQEADKLRAQISNLQNNNRQMMGESLGSMSAKELKNLETKLEKGISRIRSKKNELLFAEIEYMQKREIDLHNNNQLLRAKIAEGERSHNNMAVLPGGSNYDSMQSQQQFDSRGYFQVTGLQPNNQYARQDQMSLQLV 242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g0636 242 CDD MADS_MEF2_like 17 86 IPR033896 GO:0000977|GO:0045944
Ssu1g0636 242 PANTHER MADS BOX PROTEIN 10 236 - -
Ssu1g0636 242 ProSiteProfiles K-box domain profile. 102 192 IPR002487 GO:0003700|GO:0005634|GO:0006355
Ssu1g0636 242 Coils Coil 102 129 - -
Ssu1g0636 242 PRINTS MADS domain signature 53 74 IPR002100 GO:0003677|GO:0046983
Ssu1g0636 242 PRINTS MADS domain signature 38 53 IPR002100 GO:0003677|GO:0046983
Ssu1g0636 242 PRINTS MADS domain signature 18 38 IPR002100 GO:0003677|GO:0046983
Ssu1g0636 242 Coils Coil 139 159 - -
Ssu1g0636 242 PANTHER AGAMOUSB 10 236 - -
Ssu1g0636 242 SUPERFAMILY SRF-like 17 88 IPR036879 GO:0003677|GO:0046983
Ssu1g0636 242 ProSitePatterns MADS-box domain signature. 18 72 IPR002100 GO:0003677|GO:0046983
Ssu1g0636 242 Gene3D - 28 94 IPR036879 GO:0003677|GO:0046983
Ssu1g0636 242 SMART madsneu2 16 75 IPR002100 GO:0003677|GO:0046983
Ssu1g0636 242 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 25 72 IPR002100 GO:0003677|GO:0046983
Ssu1g0636 242 Pfam K-box region 100 186 IPR002487 GO:0003700|GO:0005634|GO:0006355
Ssu1g0636 242 ProSiteProfiles MADS-box domain profile. 16 76 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g0636 Ssu-Chr1 14436271 14445019 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g0636 14 242 MADS-box Gene Family AT3G58780 68.511 3.37e-110 315
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Ssu1g0636 K-box 2.3e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g0636 K09264 - gmx:732595 437.573
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g0636 1 14436271 14445019 Ssu1g0636 1 14436271 14445019 ECH
Ssu5g2521 5 69174271 69180003 Ssu1g0636 1 14436271 14445019 PCT