Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g0634 ATGGAATCGAAAAACCCTGCGAGGTTTACGCTGGGGAAGCAGTCGTCGCTGGCCCCAGAACGCCGTAACGAAGAAGCAGAGCCGCGAAACGACGGAGACGCTGTTGATCAGGGTGTGAGGTTGATGTATTCGGCATTCGAAGGCGATGTGGACGGTATTCGCGAGGTGTTGGAGTCTGGCGTGAGTGTGAATTTCAAGGATATTGACGATCGCACTGCTCTTCATGTTGCGGCGTGTGAGGGCTTCACTGATGTCGCTGATTTGTTGCTCCAGAAAGGTGCTGAAGTTGACCCCAAGGATCGATGGGGAAGCACGCCACTTGCAGAtgccattttttataaaaaaaatgacgtgATCAAACTATTGGAGAAGCATGGAGCGAAGCCTCTGATGGCCCCTATGCATGTTAATCATGCACGTGAAGTCCCAGAGTATGAAATCAATCCCAAAGAGCTTGATTTTACCAACAGTGAGGAGATAACAAAGGGGACTTTCTGTAGTGCATTGTGGCGTGGAACAGAGGTTGCAGTAAAAAAGCTTGGGGAGGATGTACTTAGTGATGAGGAGAAAGTGAAGGCTTTCAGAGATGAGCTTGCTCTGTTCCAGAAGATCCGGCATCCAAATGTCGTCCAATTTCTGGGTGCTGTGACCCAGAGTAGTCCAATGATGATTGTGACAGAATATCTTCCCAAGGGAGATCTTCGTGATTtcttgaaaagaaaaggagCTTTGAAACCATCAACAGCTGTGAGATTTGCACTTGATATTGCTAGGGGAGTGGGTTatttgcatgaaaataagccATCACCCATTATTCACCGCGATCTTGAGCCTTCTAATATATTGAGGGATGATTCTGGGCACCTAAAAGTTGCAGACTTTGGGGTTAGCAAGTTGCTGGCAGTTAAAGAAGACAGACCTCTAACATGCCAAGATACTTCCTgCCGCTATGTGGCTCCTGAAGTTTTCAAACAAGAAGAATATGACACTAAAGTGGATGTATTTTCATTTGCACTAATTCTGCAAGAGATGATTGAAGGCTGCCCTCCTTTTTTTGCCAAGCAAGAAGATGAAGTTCCTAAGGTATATGCTGCAAAAGAGCGACCACCTTTCCGAGCTCCAGCCAAGCATTATTCCCATGGAATTCGAGAATTGATTGAAGAGTGCTGGAATGAGAATCCAGCTAAGAGGCCAACGTTTAGGCAAATAATAACAAGGCTGGAGTCCATATACAGCACAATTGGTCAAAAAAGACGTTGGAAGGTTAGGCCATTGAAATGCTTCCAGAATCTGGAAGCCTTATTGAAGAGAGATCATTCAAATGCAAGTAGTCGGGGCGGTTCATCTCGCTCCCCGTCCAGCCGTATATGA 1371 0.4449 MESKNPARFTLGKQSSLAPERRNEEAEPRNDGDAVDQGVRLMYSAFEGDVDGIREVLESGVSVNFKDIDDRTALHVAACEGFTDVADLLLQKGAEVDPKDRWGSTPLADAIFYKKNDVIKLLEKHGAKPLMAPMHVNHAREVPEYEINPKELDFTNSEEITKGTFCSALWRGTEVAVKKLGEDVLSDEEKVKAFRDELALFQKIRHPNVVQFLGAVTQSSPMMIVTEYLPKGDLRDFLKRKGALKPSTAVRFALDIARGVGYLHENKPSPIIHRDLEPSNILRDDSGHLKVADFGVSKLLAVKEDRPLTCQDTSCRYVAPEVFKQEEYDTKVDVFSFALILQEMIEGCPPFFAKQEDEVPKVYAAKERPPFRAPAKHYSHGIRELIEECWNENPAKRPTFRQIITRLESIYSTIGQKRRWKVRPLKCFQNLEALLKRDHSNASSRGGSSRSPSSRI 456
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g0634 456 SUPERFAMILY Protein kinase-like (PK-like) 143 408 IPR011009 -
Ssu1g0634 456 CDD STKc_MAP3K-like 160 407 - -
Ssu1g0634 456 PIRSF ILK 1 430 - -
Ssu1g0634 456 SMART ANK_2a 36 65 IPR002110 GO:0005515
Ssu1g0634 456 SMART ANK_2a 69 98 IPR002110 GO:0005515
Ssu1g0634 456 SMART ANK_2a 102 131 IPR002110 GO:0005515
Ssu1g0634 456 SUPERFAMILY Ankyrin repeat 40 131 IPR036770 -
Ssu1g0634 456 MobiDBLite consensus disorder prediction 18 34 - -
Ssu1g0634 456 Gene3D - 6 145 IPR036770 -
Ssu1g0634 456 Gene3D Transferase(Phosphotransferase) domain 1 230 446 - -
Ssu1g0634 456 PANTHER SERINE/THREONINE-PROTEIN KINASE HT1-LIKE ISOFORM X1 9 438 - -
Ssu1g0634 456 ProSiteProfiles Ankyrin repeat profile. 69 101 IPR002110 GO:0005515
Ssu1g0634 456 PRINTS Tyrosine kinase catalytic domain signature 378 400 IPR001245 GO:0004672|GO:0006468
Ssu1g0634 456 PRINTS Tyrosine kinase catalytic domain signature 226 239 IPR001245 GO:0004672|GO:0006468
Ssu1g0634 456 PRINTS Tyrosine kinase catalytic domain signature 265 283 IPR001245 GO:0004672|GO:0006468
Ssu1g0634 456 Pfam Ankyrin repeats (3 copies) 41 129 IPR002110 GO:0005515
Ssu1g0634 456 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 9 438 - -
Ssu1g0634 456 Pfam Protein tyrosine and serine/threonine kinase 171 407 IPR001245 GO:0004672|GO:0006468
Ssu1g0634 456 ProSiteProfiles Protein kinase domain profile. 154 414 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu1g0634 456 ProSiteProfiles Ankyrin repeat region circular profile. 69 101 - -
Ssu1g0634 456 MobiDBLite consensus disorder prediction 1 34 - -
Ssu1g0634 456 Gene3D Phosphorylase Kinase; domain 1 146 229 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g0634 Ssu-Chr1 14357885 14374329 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g0634 8 428 MAP Kinase Kinase Kinase AT4G18950 69.718 0.0 620
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-5 Ssu1g0634 PK_Tyr_Ser-Thr 9.7e-55 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g0634 - - gmx:100790126 841.262
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g0634 1 14357885 14374329 Ssu1g0634 1 14357885 14374329 ECH