Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g0629 ATGGCACCCACGAAAGTCAAAGCCATAGGCATTGACTTGGGCACAACCTACAGCTGCGTGGCTGTGTGGCAACACAACCGAGTCGAGGTCATCCCCAACGACCAAGGCAACCGCACCACCCCTTCCTACGTTGCCTTCACCGACACTCAAAGGTTGTCGGGCGATGCCGCCATGAACCAGCGAACCAAGAATCCACACAACACCATCTTCGACGCCAAACGCTTGATCGGGCGCCGATTCTCCGACCAATCCGTTCAGCAAGACATGAAGCTGTGGCCCTTCAATGTTGTCCCTGGCATCAGAGACAAGCCCATGATCGCGGTCAGCTACAAAGACGAAGAGAAACTCCTTGCAGCCGAGGAGATATCTTCCATGGTGCTGTTTAAGATGAAGGAGATTGCCGAAGCCTATTTGGGTCACGCGGTGGATAATGCGGTGATCACTGTCCCTGCTTACTTCAGCAACGCGCAGAGACAAGCCACGAAGGATGCCGGGAAAATCGCGGGTTTGAACGTGTTGAGGATCATCAACGAGCCAACCGCAGCCGCTATTGCTTACGGGTTGGACAAGAAAGGATGGAGAGAAGGTGAGCAGAACGTGCTTGTGTTCGACCTCGGTGGCGGCACTTTCGATGTTTCCTTGGTGACAATTGATGAAGGGATGTTTAAGGTTAAGGCCACGGTGGGAGACACTCATTTGGGTGGTGTTGACTTTGATAGCAAATTGGTGAACCATCTTGTGAGTGTGTTCAGGAGGAAGTACAAGAAGGACATTAGTGAAAATCCCAAAGCTCTTGGAAGGTTGAGGTCGGCGTGCGAGAAAGCCAAGAGGACTCTCTCTTCTAGTTCGCAAGCCACTATTGAGCTTGACTCTTTATGTGGAGGGATTGATCTACATGCCGTCGTTACAAGGGCCTTGTTCGAGGAACTGAACAAGGACTTGTTCGTAAAGTGTATGCAGACGGTGGAGAAGTGCCTCGACGAGGCAAGGATTGACAAAAGCCAAGTCCATGAGTTTGTTCTCGTAGGTGGGTCTACTAGAATTCCCAAGGTGCAGCAACTTCTGAAGGAGATGTTCAGCGTCAATGGCCAAGTCAAGGAGCTTTGCAAAAGCATCAACCCCGACGAGGCCGTGGCGTATGGCGCGGCGGTTCAGGCGGCGATTTTGAGCGGTGAAGGAGACAAGAAGGTGGAGGAGTTGTTGTTGCTGGATGTGATGCCACTTAGTCTTGGAATTGAGACTGACGGTGGTGAGATGTCAGTGTTGATTCCCAAGAATACCATGATCCCCACCAAGAAAGAGAGCGTTTTCACTACGTTCTCGGATAATCAGAGAAGCGTTTTGATCAAAGTGTACGAGGGGGAGCAAGCAAAGACCAAGGATAACTTCCTTCTTGGGAAGTTTGAGCTTTCTGGGTTCACTCCATCGCCAAGTGGGGTTCCACAGATCAATGTTGGCTTTGATGTGGATGTTGATGGCATCGTGGAGGTCACTGCCCAGGATAGGAGCACGGGGTTGAAGAAGAAGATCACGATCAGCAACAAGCATGGCAGGTTGAGCCCCGAAGAGATGAGGAGGATGGTGAGAGATGCGGAGAGGTATAAGGCAGAGGATGAGGAGGTCAGGAACAAGGTGAGGGCCAAGAACTTGCTTGAGAATTATGCTTTTGAGATGAGGGACAGAGTGAAGAAGCTTGAGAAGGCGGTGGAGGAGACCATAGAATGGCTTGACAGAAACCAGTTGGCTGAAACTGATGAGTTTGAGTACAAGAAGCAGGAGTTGGTAGAAAGGGTTCTGCAGTTTAAGTAA 1809 0.508 MAPTKVKAIGIDLGTTYSCVAVWQHNRVEVIPNDQGNRTTPSYVAFTDTQRLSGDAAMNQRTKNPHNTIFDAKRLIGRRFSDQSVQQDMKLWPFNVVPGIRDKPMIAVSYKDEEKLLAAEEISSMVLFKMKEIAEAYLGHAVDNAVITVPAYFSNAQRQATKDAGKIAGLNVLRIINEPTAAAIAYGLDKKGWREGEQNVLVFDLGGGTFDVSLVTIDEGMFKVKATVGDTHLGGVDFDSKLVNHLVSVFRRKYKKDISENPKALGRLRSACEKAKRTLSSSSQATIELDSLCGGIDLHAVVTRALFEELNKDLFVKCMQTVEKCLDEARIDKSQVHEFVLVGGSTRIPKVQQLLKEMFSVNGQVKELCKSINPDEAVAYGAAVQAAILSGEGDKKVEELLLLDVMPLSLGIETDGGEMSVLIPKNTMIPTKKESVFTTFSDNQRSVLIKVYEGEQAKTKDNFLLGKFELSGFTPSPSGVPQINVGFDVDVDGIVEVTAQDRSTGLKKKITISNKHGRLSPEEMRRMVRDAERYKAEDEEVRNKVRAKNLLENYAFEMRDRVKKLEKAVEETIEWLDRNQLAETDEFEYKKQELVERVLQFK 602
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g0629 602 SUPERFAMILY Heat shock protein 70kD (HSP70), peptide-binding domain 396 552 IPR029047 -
Ssu1g0629 602 Coils Coil 524 544 - -
Ssu1g0629 602 SUPERFAMILY Heat shock protein 70kD (HSP70), C-terminal subdomain 547 596 IPR029048 -
Ssu1g0629 602 Gene3D - 548 600 IPR029048 -
Ssu1g0629 602 Pfam Hsp70 protein 8 598 IPR013126 GO:0005524|GO:0140662
Ssu1g0629 602 PANTHER SHOCK PROTEIN, PUTATIVE-RELATED 4 594 - -
Ssu1g0629 602 SUPERFAMILY Actin-like ATPase domain 8 190 IPR043129 -
Ssu1g0629 602 Gene3D - 9 387 - -
Ssu1g0629 602 Gene3D - 191 369 - -
Ssu1g0629 602 PRINTS 70kDa heat shock protein signature 208 218 - -
Ssu1g0629 602 PRINTS 70kDa heat shock protein signature 7 20 - -
Ssu1g0629 602 PRINTS 70kDa heat shock protein signature 480 496 - -
Ssu1g0629 602 PRINTS 70kDa heat shock protein signature 35 47 - -
Ssu1g0629 602 PRINTS 70kDa heat shock protein signature 57 65 - -
Ssu1g0629 602 PRINTS 70kDa heat shock protein signature 372 392 - -
Ssu1g0629 602 PRINTS 70kDa heat shock protein signature 145 165 - -
Ssu1g0629 602 PRINTS 70kDa heat shock protein signature 399 418 - -
Ssu1g0629 602 ProSitePatterns Heat shock hsp70 proteins family signature 2. 202 215 IPR018181 -
Ssu1g0629 602 ProSitePatterns Heat shock hsp70 proteins family signature 1. 11 18 IPR018181 -
Ssu1g0629 602 PANTHER HEAT SHOCK PROTEIN 70KDA 4 594 IPR013126 GO:0005524|GO:0140662
Ssu1g0629 602 Gene3D Substrate Binding Domain Of DNAk; Chain A, domain 1 394 547 IPR029047 -
Ssu1g0629 602 SUPERFAMILY Actin-like ATPase domain 197 389 IPR043129 -
Ssu1g0629 602 Gene3D - 70 125 - -
Ssu1g0629 602 Gene3D Actin; Chain A, domain 4 234 317 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g0629 Ssu-Chr1 14125919 14127727 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g0629 1 594 Calmodulin-binding Proteins AT1G16030 68.750 0.0 866
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g0629 K03283 - gmx:100788531 1068.14