Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g0628 ATGGCAACCGAAAAAGCGAAAACTATAGGCATCGACTTGGGCACAACCTACAGCTGTGTGGCAGTGTGGCAAAACAACCGTGCAGAGGTCATTCCCAACGACCAAGGCAACCGCACCACCCCTTCTTACGTTGCCTTCACTGACACCCAAAGGTTGTTGGGCGATGCTGCCAAGAACCAGCGATCCATGAATCCACACAACACTGTCTTCGACGCCAAACGTTTGATTGGTCGCCGATTTTCCGACCACTCGGTTCAACAGGACATGAAGCTGTGGCCATTTAAGGTTGTCCCTGGCAAGGGAGACAAGCCCATGATCGCGGTCACTTACAAAGGCAAAGAGAAACACCTTACAGCCCAAGAGATATCTTCCATGGTGTTGTTTAAGATGAAGGAGGTTGCTGAAGCCTATTTGGGTCAGGCGGTGAATGATGCGGTTATCACTGTCCCTGCTTATTTCACCAACTCACAGAGACAAGCCACAAAGGATGCGGGGAAAATCGCGGGTTTGAACGTGAAGAGGATCATCAACGAGCCAACCGCGGCTGCTATTGCTTACGGGTTGGACAAAAAAGGATGGAGAGAGGGTGAGCAGAACGTGCTTGTGTTCGATCTCGGTGGTGGCACTTTCGATGTTTCCTTGGTGACCATCGATGAAGGGATGTTTAAGGTTAAGGCCACGGTGGGAGACACTCATTTGGGCGGTGTGGACTTTGATAACAAATTGGTGAACCATCTTGTTAATGTGTTTAAAGCGAAGCATATGAAGGATATTAGTGGAAACGCCAAAGCTCTCGGGAGGTTGAGGTCAGCGTGCGAGAGAGCTAAGAGGACTCTGTCTTCAACTTCTCAGACCACGATAGAGCTTGATTGTTTATACGAAGGGGTGGATCTATATGCCACTGTTACGAGGGCCTTGTTCGAGGAATTGAACAAGGATTTGTTCGTTAAGTGTAAGGAGACAGTGGAGAAGTGCCTCGTTGAGGCAAGGGTAGATAAGATCCGAGTCCATGAGATCGTTCTCGTCGGTGGGTCTACTAGAATTCCCAAGGTACAACAACTTTTGAGGGACATGTTCAGTGTCAATGGTAACATCAAAGAGCTTTGCAAAAGCATCAATCCTGACGAGGCCGTGGCGTGCGGTGCTGCAGTTCAGGCAGCGATTTTGAGCGGCGAAGGAGACAAGAAAGTTGAGGAATTGTTGTTGCTGGATGTGATGCCAATTAGTCTTGGAGTTCAGGCTAGTGGTGGTGCCATGTCAGTCTTGATTCCTAAGAACACCATGATTCCCACCAAGAAGGAGAGGGTTTTCTCTACCCGTTTTGACAAACAGAAAAGTGTAAAGGTCGAAGTGTACGAGGGAGAAGGAGTTACGACAAAGGATAAATTCTTTCTTGGGAAACTTAAACTTGTCCTCTCTCGGTTCGCTCCATCACCGACAGGATTCCCACATATTAATGTAAGCTTTGATGTGGATGCTGATGGTATTCTGAAGGTCACTGCGGAAGATAAAGCCACGGGGTTGGAAAAGCAGATCACGATGAAGAAAATGCACGGAAGGCTGAACCCGAAAGAGATCAGAAGGATGGTGGATGATTCGAGGAAGTATGAGGCAGAGGATGAGGTGGCGAGGAGGAAGGTGAAGGCGAAGAACTCACTTGAGTATTACGCTTATGAAATGAGGGAGAGAGCGAGGAAGATCGAGGAGGCAGTGGAGGAGACCATAGAGTGGCTTGAAAGAAACCAGTTGGCGGAGATAGAGGAGTTTGAGTACAAGAAGCGGGAGTTAGGAATGTATCTGCGAGATGATCCCAATTCTAAATCTAATACCTCAAATTCTGAGGTGAAGGTTCCTATTTGGTGTACGTGGAGATGTCCACCTAATGGGTGGGTTTGCCTCAACACGGATGGGTCGGTGTTTGAGAACCATCGAACTGGTCGTAGTGGGGCTGCTTGTGGTGGTCTAGTTCGGGATTCCTCAGGATGTTTTCTTGGTGGTTTCACTGTTAACTTAGGTGTCACATCGGTCGCTTTAGCGGAGTTGTGGGGGGTTGTTCACGGCCTCAAGTTGACCTGGGATCTTGGGTGTAAGAAGGTGAAGGTAGATATTGATTCTCTGACCGCTCTTGGTCTGGTTAGGCATTGCCCAGGGGCTAACGACCCAGCTTTTGAGTTGGTTTCGGAGATCAATGAGCTTGTTCGCAAAGATTGGTTGGTGGAGTTCTCACACGTGTTCAGAGAATCTAATCGTGCGGCTGATCGTTTGGCTCACTTGGGACACTCGCGCTCTTTGAAGTCGGGTGCGAAACGCTTCTCGGACGCGCCCTCTGCCCTTGCTGATATTCTTCGAGATGACTTGGCAGGGGTTGCAAAGCAACGCGGCGTTCCCTAA 2391 0.4906 MATEKAKTIGIDLGTTYSCVAVWQNNRAEVIPNDQGNRTTPSYVAFTDTQRLLGDAAKNQRSMNPHNTVFDAKRLIGRRFSDHSVQQDMKLWPFKVVPGKGDKPMIAVTYKGKEKHLTAQEISSMVLFKMKEVAEAYLGQAVNDAVITVPAYFTNSQRQATKDAGKIAGLNVKRIINEPTAAAIAYGLDKKGWREGEQNVLVFDLGGGTFDVSLVTIDEGMFKVKATVGDTHLGGVDFDNKLVNHLVNVFKAKHMKDISGNAKALGRLRSACERAKRTLSSTSQTTIELDCLYEGVDLYATVTRALFEELNKDLFVKCKETVEKCLVEARVDKIRVHEIVLVGGSTRIPKVQQLLRDMFSVNGNIKELCKSINPDEAVACGAAVQAAILSGEGDKKVEELLLLDVMPISLGVQASGGAMSVLIPKNTMIPTKKERVFSTRFDKQKSVKVEVYEGEGVTTKDKFFLGKLKLVLSRFAPSPTGFPHINVSFDVDADGILKVTAEDKATGLEKQITMKKMHGRLNPKEIRRMVDDSRKYEAEDEVARRKVKAKNSLEYYAYEMRERARKIEEAVEETIEWLERNQLAEIEEFEYKKRELGMYLRDDPNSKSNTSNSEVKVPIWCTWRCPPNGWVCLNTDGSVFENHRTGRSGAACGGLVRDSSGCFLGGFTVNLGVTSVALAELWGVVHGLKLTWDLGCKKVKVDIDSLTALGLVRHCPGANDPAFELVSEINELVRKDWLVEFSHVFRESNRAADRLAHLGHSRSLKSGAKRFSDAPSALADILRDDLAGVAKQRGVP 796
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g0628 796 CDD RNase_H_like 633 757 IPR044730 -
Ssu1g0628 796 Gene3D - 630 760 IPR036397 GO:0003676
Ssu1g0628 796 PRINTS 70kDa heat shock protein signature 145 165 - -
Ssu1g0628 796 PRINTS 70kDa heat shock protein signature 208 218 - -
Ssu1g0628 796 PRINTS 70kDa heat shock protein signature 372 392 - -
Ssu1g0628 796 PRINTS 70kDa heat shock protein signature 482 498 - -
Ssu1g0628 796 PRINTS 70kDa heat shock protein signature 57 65 - -
Ssu1g0628 796 PRINTS 70kDa heat shock protein signature 399 418 - -
Ssu1g0628 796 PRINTS 70kDa heat shock protein signature 7 20 - -
Ssu1g0628 796 PRINTS 70kDa heat shock protein signature 35 47 - -
Ssu1g0628 796 SUPERFAMILY Heat shock protein 70kD (HSP70), peptide-binding domain 396 554 IPR029047 -
Ssu1g0628 796 Pfam Reverse transcriptase-like 634 757 IPR002156 GO:0003676|GO:0004523
Ssu1g0628 796 SUPERFAMILY Ribonuclease H-like 629 761 IPR012337 -
Ssu1g0628 796 Gene3D - 550 601 IPR029048 -
Ssu1g0628 796 PANTHER HEAT SHOCK PROTEIN 70KDA 4 597 IPR013126 GO:0005524|GO:0140662
Ssu1g0628 796 Coils Coil 561 581 - -
Ssu1g0628 796 Gene3D - 191 369 - -
Ssu1g0628 796 SUPERFAMILY Heat shock protein 70kD (HSP70), C-terminal subdomain 549 596 IPR029048 -
Ssu1g0628 796 SUPERFAMILY Actin-like ATPase domain 8 190 IPR043129 -
Ssu1g0628 796 ProSitePatterns Heat shock hsp70 proteins family signature 2. 202 215 IPR018181 -
Ssu1g0628 796 PANTHER SHOCK PROTEIN, PUTATIVE-RELATED 4 597 - -
Ssu1g0628 796 ProSitePatterns Heat shock hsp70 proteins family signature 3. 339 353 IPR018181 -
Ssu1g0628 796 ProSitePatterns Heat shock hsp70 proteins family signature 1. 11 18 IPR018181 -
Ssu1g0628 796 Gene3D Substrate Binding Domain Of DNAk; Chain A, domain 1 394 549 IPR029047 -
Ssu1g0628 796 Pfam Hsp70 protein 9 597 IPR013126 GO:0005524|GO:0140662
Ssu1g0628 796 Gene3D - 9 387 - -
Ssu1g0628 796 Gene3D - 70 125 - -
Ssu1g0628 796 Gene3D Actin; Chain A, domain 4 234 317 - -
Ssu1g0628 796 ProSiteProfiles RNase H type-1 domain profile. 627 761 IPR002156 GO:0003676|GO:0004523
Ssu1g0628 796 SUPERFAMILY Actin-like ATPase domain 195 391 IPR043129 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g0628 Ssu-Chr1 14096144 14098534 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g0628 1 596 Calmodulin-binding Proteins AT1G16030 66.721 0.0 837
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g0628 K03283 - gmx:100795699 1311.21