LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Ssu1g0626	ATGGAAACCGAAAAAGTAAAAGCTATAGGCATTGACTTGGGCACAGCCTACAGCTGCGTGGCAGTGTGGCAAAACAACCGCGTGGAGGTCATTCCCAACGACCAAGGCAGCCGCACCACCCCTTCTTACGTTGCCTTCACCGATACCCAAAGGTTGTTGGGCGACGCTGCCATGAACCAGCGATCCATGAATCCACACAGCACCGTCTTTGACGCCAAACGTTTGATCGGTCGCCGATTCTCCGACCAATCCGTTCAGCAAGACATGAAGCTGTGGCCCTTTAAGGTTGTCCCTGGCACAAGAGACAAGCCCATGATCGCGGTCACCTACAAAGGCGAAGAGACACACCTTGCAGCTGAAGAGATATCTTCCATGGTGTTGTTTAAGATGAAAGAGGTTGCGGAAGCCTATTTGGGTGACGCAGTGAAGGATGCGGTTATCACTGTCCCTGCTTATTTCACCAACTCACAGAGACAAGCCACAAAGGATGCGGGGAAAATCGTGGGTTTGAACGTGATGAGGATCATCAATGAGCCAACCGCGGCTGCTATTGCTTACGGGTTGGACAAAAAAGGATGGAGAGAGGGTGAGCAGAACGTGCTTGTGTTCGATCTCGGTGGTGGCACTTTTGATGTTTCCTTGGTGACCATCGATGAAGGGATGTTTAGGGTTAAGGCCACGGTGGGAGACACTCATTTGGGCGGTGTGGACTTTGATAACAATTTGGTGAACCATCTTGTGAATGTGTTTAAAGAGAAGCACATGAAGGATATTAGTGGAAACGCCAAAGCTCTCGGGAGGTTGAGGTCAGCGTGCGAGAGAGCTAAGAGGACTCTGTCTTCAACTTCTCAGACCACGATAGAGCTTGATTGTTTATATGAAGGGGTTGATCTATATGCCACTGTTACGAGGGCCTTGTTCGAGGAACTGAACAAGGACTTGTTCGTTAAGTGTATGGAGACAGTGGAGAAGTGCCTCGTTGAGGCAAGGGTTGATAAGATCCAAGTCCATGAGATCGTTCTTGTCGGTGGATCTACTAGAATTCCCAAGGTTCAGCAACTTTTGAAGGACATGTTCAGTGTCAATGGTAACATACTAACATCAAAGAGCTTTGCAAAAGCATCAACCCTGACGAGGCGGTGGCGTACGGTGCTGCAGTTCAGGCAGCGATTTTGA	1176	0.4932	METEKVKAIGIDLGTAYSCVAVWQNNRVEVIPNDQGSRTTPSYVAFTDTQRLLGDAAMNQRSMNPHSTVFDAKRLIGRRFSDQSVQQDMKLWPFKVVPGTRDKPMIAVTYKGEETHLAAEEISSMVLFKMKEVAEAYLGDAVKDAVITVPAYFTNSQRQATKDAGKIVGLNVMRIINEPTAAAIAYGLDKKGWREGEQNVLVFDLGGGTFDVSLVTIDEGMFRVKATVGDTHLGGVDFDNNLVNHLVNVFKEKHMKDISGNAKALGRLRSACERAKRTLSSTSQTTIELDCLYEGVDLYATVTRALFEELNKDLFVKCMETVEKCLVEARVDKIQVHEIVLVGGSTRIPKVQQLLKDMFSVNGNILTSKSFAKASTLTRRWRTVLQFRQRF	391

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Ssu1g0626	391	Gene3D	-	70	125	-	-
	Ssu1g0626	391	Pfam	Hsp70 protein	8	360	IPR013126	GO:0005524\|GO:0140662
	Ssu1g0626	391	PANTHER	HEAT SHOCK PROTEIN 70KDA	4	363	IPR013126	GO:0005524\|GO:0140662
	Ssu1g0626	391	Gene3D	Actin; Chain A, domain 4	234	317	-	-
	Ssu1g0626	391	Gene3D	-	9	190	-	-
	Ssu1g0626	391	ProSitePatterns	Heat shock hsp70 proteins family signature 2.	202	215	IPR018181	-
	Ssu1g0626	391	ProSitePatterns	Heat shock hsp70 proteins family signature 3.	339	353	IPR018181	-
	Ssu1g0626	391	SUPERFAMILY	Actin-like ATPase domain	195	361	IPR043129	-
	Ssu1g0626	391	Gene3D	-	191	360	-	-
	Ssu1g0626	391	SUPERFAMILY	Actin-like ATPase domain	8	190	IPR043129	-
	Ssu1g0626	391	PANTHER	SHOCK PROTEIN, PUTATIVE-RELATED	4	363	-	-
	Ssu1g0626	391	PRINTS	70kDa heat shock protein signature	7	20	-	-
	Ssu1g0626	391	PRINTS	70kDa heat shock protein signature	208	218	-	-
	Ssu1g0626	391	PRINTS	70kDa heat shock protein signature	336	352	-	-
	Ssu1g0626	391	PRINTS	70kDa heat shock protein signature	57	65	-	-
	Ssu1g0626	391	PRINTS	70kDa heat shock protein signature	145	165	-	-
	Ssu1g0626	391	PRINTS	70kDa heat shock protein signature	35	47	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Ssu1g0626	Ssu-Chr1	14072978	14074153	Proximal

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Ssu1g0626	8	360	Calmodulin-binding Proteins	AT5G02500	75.354	0.0	566

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Ssu1g0626	K03283		-	gmx:100795699	637.106