Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g0618 ATGTCGGTGATGGCCGATAATTCACCGAACAATGGAAGCGACGAGGTGGTTTTAAATGTAAACGGTGATGCCTCCAAAAAGTCCGACGACTCAGGCAACCAAGACTGTGTACCTCTTTTGCAGAAGTTGGTAGCAGAGGTGGTGGGGACGTACTTCTTGATATTTGCAGGGTGTGGTTCGGTGGTGGTGAACCTTGACAAGGAGAAGGTGATCACACAACCTGGGATTTCAATTGTTTGGGGACTCACTGTTATGGTGTTGGTTTACTCTGTTGGTCACATCTCTGGTGCTCATTTCAACCCTGCTGTCACCATTGCTCATGCTTCAACCAAGAGGTTTCCTTTGAAGCAGGTACCAGCTTATGTGATAGCTCAGTTCGTTGGTTCCACACTTGCTAGTGGATCTCTCAGACTTATATTCAATGGCAGGGATGACCATTTTGCAGGAACACTCCCCGCCGGTTCTGACTTGCAATCTTTTGTGGTCGAATTCATAATCACTTTTTATCTCATGTTCGTCATTTCTGGAGTTGCCACCGATAACAGAGCGATTGGTGAGTTGGCAGGGCTTGCAGTTGGGTCTACGATACTGCTAAATGTGATGTTTGCAGGGCCAATCACAGGTGCATCAATGAATCCAGCAAGAAGCTTAGGGCCTGCTATTGTGCACCATGAGTACAGAGGAATATGGATATATTTGGTGTCACCAACTCTTGGAGCTGTGGCCGGTACATGGGCCTACACTTTCGTCAGGTACACAAACAAGCCAGTGCGTGAGATCTCCCAGAGTGCCTCTTTCCTCAAAGGTCGTCAAGCTGAGTGA 822 0.4769 MSVMADNSPNNGSDEVVLNVNGDASKKSDDSGNQDCVPLLQKLVAEVVGTYFLIFAGCGSVVVNLDKEKVITQPGISIVWGLTVMVLVYSVGHISGAHFNPAVTIAHASTKRFPLKQVPAYVIAQFVGSTLASGSLRLIFNGRDDHFAGTLPAGSDLQSFVVEFIITFYLMFVISGVATDNRAIGELAGLAVGSTILLNVMFAGPITGASMNPARSLGPAIVHHEYRGIWIYLVSPTLGAVAGTWAYTFVRYTNKPVREISQSASFLKGRQAE 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g0618 273 Pfam Major intrinsic protein 38 247 IPR000425 GO:0015267|GO:0016020|GO:0055085
Ssu1g0618 273 PANTHER AQUAPORIN NIP2-1 4 269 IPR034294 -
Ssu1g0618 273 PRINTS Major intrinsic protein family signature 41 60 IPR000425 GO:0015267|GO:0016020|GO:0055085
Ssu1g0618 273 PRINTS Major intrinsic protein family signature 162 180 IPR000425 GO:0015267|GO:0016020|GO:0055085
Ssu1g0618 273 PRINTS Major intrinsic protein family signature 230 250 IPR000425 GO:0015267|GO:0016020|GO:0055085
Ssu1g0618 273 PRINTS Major intrinsic protein family signature 117 136 IPR000425 GO:0015267|GO:0016020|GO:0055085
Ssu1g0618 273 PRINTS Major intrinsic protein family signature 80 104 IPR000425 GO:0015267|GO:0016020|GO:0055085
Ssu1g0618 273 PRINTS Major intrinsic protein family signature 193 215 IPR000425 GO:0015267|GO:0016020|GO:0055085
Ssu1g0618 273 Gene3D Glycerol uptake facilitator protein. 4 264 IPR023271 -
Ssu1g0618 273 TIGRFAM MIP: MIP family channel proteins 45 247 IPR000425 GO:0015267|GO:0016020|GO:0055085
Ssu1g0618 273 CDD MIP 41 250 IPR000425 GO:0015267|GO:0016020|GO:0055085
Ssu1g0618 273 ProSitePatterns MIP family signature. 98 106 IPR022357 -
Ssu1g0618 273 MobiDBLite consensus disorder prediction 1 33 - -
Ssu1g0618 273 PANTHER MAJOR INTRINSIC PROTEIN (MIP) FAMILY TRANSPORTER 4 269 - -
Ssu1g0618 273 SUPERFAMILY Aquaporin-like 38 260 IPR023271 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g0618 Ssu-Chr1 13914040 13933025 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g0618 37 268 Major Intrinsic Protein MIP AT5G37820 62.500 1.19e-100 295
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g0618 K09874 - gmx:100812577 502.286
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g0618 1 13914040 13933025 Ssu1g0618 1 13914040 13933025 ECH
Ssu5g2510 5 69044001 69046496 Ssu1g0618 1 13914040 13933025 PCT