Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g0608 ATGATGGAGGAAGGTCAGGGCAGTCCTAGTTCCCTGCCACCTTTCCTCACCAAGACTTATGAGATGGTGGATGATCCTTCCACTAATTCCATTGTTTCCTGGAGTGCCACCAATAAGAGTTTCATTGTTTGTAACCCACCAGAGTTTTCAAGGGACTTGTTACCCAGATTCTTTAAGCACAATAACTTCTCCAGTTTTATCAGGCAGCTCAACACTTACGGGTTTAGAAAGATCGACCCTGAACAATGGGAATTTGCAAATGATGATTTTATAAGAGGTCAACCACATCTTTTGAAGAATATCCATAGGCGCAAACCTGTTCATAGCCATTCATTGCAGAATCTCCCGGGTCAAGGGGCTACTCCACTGACCGAATCGGAACGGCTGAGTTTGGCAGATGAGATAGAGAAGCTTAAGCATGATAAAGAACAACTTCTTCAGGAGTTAGAGAGGCATGAACAGGAGTGGAAAATGTATGAGGTACAATTACGATGCTCAACAGATCGTTTGGAAAAGTTGGAAAAGAAGCATGAAAATATGCTTTCTTCTGTTTCTCAAGTGTTGCAGAAACCTGGGATTGCCTTAAATCTCTTGCAACTGACAGAAAACATGGATAGAAAGCGTAGGTTGCCGAGAAGTGGTGCCTTTAGTGATGACGCTAACATTGAAGATCATGTGGAAACTTCCCCAGTATTATCTAGGGAAAATGCCGAGGGTACCTCTACTTTCACCTTGAACATGGAGCGATTGGATATGCTTGAGTCATCCATGGTGTTTTGGGAGAATATTGCTCATGATGTTGGTGACACCTTTGTTCAAAGTCATTCAAACTTGGATTTTGACGAATCTACAAGTTGTGCAGATAGTCCAGCTATATCTTGTGTGCAACTAGATGTTGAAGTTCAGCCTAAGTCACCTGGAATTGACATGAATTCTGAACCAGCTGCAGCTGCTGTACCTGATCTTGATGCATCAAAAGAACAGCCTGTGGGAACAGCCCCTGTAGCTACTGGTGTTAATGATGTATTCTGGGAACAATTCTTGACAGAGAATCCTGGTTCATCTGAAACACAGGAAGTGCTGTCTGAAAGAAAGGATCCTGATGGCAGAAATAATAGCAGATTTTGGTGGAACATTAGGAATGAGGAGGAAATTGTTAACTGCTAG 1167 0.4259 MMEEGQGSPSSLPPFLTKTYEMVDDPSTNSIVSWSATNKSFIVCNPPEFSRDLLPRFFKHNNFSSFIRQLNTYGFRKIDPEQWEFANDDFIRGQPHLLKNIHRRKPVHSHSLQNLPGQGATPLTESERLSLADEIEKLKHDKEQLLQELERHEQEWKMYEVQLRCSTDRLEKLEKKHENMLSSVSQVLQKPGIALNLLQLTENMDRKRRLPRSGAFSDDANIEDHVETSPVLSRENAEGTSTFTLNMERLDMLESSMVFWENIAHDVGDTFVQSHSNLDFDESTSCADSPAISCVQLDVEVQPKSPGIDMNSEPAAAAVPDLDASKEQPVGTAPVATGVNDVFWEQFLTENPGSSETQEVLSERKDPDGRNNSRFWWNIRNEEEIVNC 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g0608 388 PANTHER HEAT STRESS TRANSCRIPTION FACTOR A-4C 2 373 - -
Ssu1g0608 388 Pfam HSF-type DNA-binding 15 104 IPR000232 GO:0003700|GO:0006355|GO:0043565
Ssu1g0608 388 Coils Coil 128 190 - -
Ssu1g0608 388 ProSitePatterns HSF-type DNA-binding domain signature. 54 78 IPR000232 GO:0003700|GO:0006355|GO:0043565
Ssu1g0608 388 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 2 373 IPR027725 -
Ssu1g0608 388 Gene3D - 8 105 IPR036388 -
Ssu1g0608 388 MobiDBLite consensus disorder prediction 353 372 - -
Ssu1g0608 388 PRINTS Heat shock factor (HSF) domain signature 53 65 IPR000232 GO:0003700|GO:0006355|GO:0043565
Ssu1g0608 388 PRINTS Heat shock factor (HSF) domain signature 66 78 IPR000232 GO:0003700|GO:0006355|GO:0043565
Ssu1g0608 388 PRINTS Heat shock factor (HSF) domain signature 15 38 IPR000232 GO:0003700|GO:0006355|GO:0043565
Ssu1g0608 388 SUPERFAMILY "Winged helix" DNA-binding domain 10 104 IPR036390 -
Ssu1g0608 388 SMART hsfneu3 11 104 IPR000232 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g0608 Ssu-Chr1 13623178 13625888 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g0608 1 381 HSF AT4G18880 54.430 2.82e-123 360
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Ssu1g0608 HSF_DNA-bind 1.6e-31 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g0608 K09419 - gmx:100784280 650.588
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g0608 1 13623178 13625888 Ssu1g0608 1 13623178 13625888 ECH
Ssu1g0608 1 13623178 13625888 Ssu5g2507 5 68959172 68960497 ECH
Ssu5g2507 5 68959172 68960497 Ssu1g0608 1 13623178 13625888 PCT