Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g0607 ATGATGAAGTGGGGAggaagaaaaccttcttcagcTTCTGGttcttctttcatttcttatgcATCTCCTTTCTCTTGGTTGCCCATGTTCAAGCAGATGAGAATCAATTCAGAGTCTAGTGCTCGAAAAATGAAGCAAAAGGCAAAGCAAAGTGCTTCACCACAGTATTCTTGTGAGTATGGAGATAGATTTTGTGTAAAGGATGATGGTGCTTTCGGTAGACAACCATTTAACGAAGAGAGTTATGAGGATAAGAAGAATAAAGATATTGGTGAGAACGTTATTCCCTCCTCAAGTTGCCATGGTGATAGAAGGGATGCTAAGAAACATGGAAGAAGAGAAGGCACACTCAAGTTAAAGGAGAAGGATATTGGtcaaggagaagaaagaaagttgcTGAATGATGGGAAGGTTTCAAAGGAGATGGATGAGTTCAATCGAGAAAAGGAATATGAAAACTTAAGGAGGAGATTTGAGAGGAGAGCACAAAAAGCTTTTCAAGAGCAACTCTTGACATTAGAAAGAAAAGtagaggaagttgagtttggatcCAGTAAAGCAGTAGAAGAAAAAGATGTGTTGCAAATTGAATCACCTAGAACAATTTGCACACCAAGAACAAATGCTTTTGCCTCTTCAACAGTTTCAAAGAATTCCATCCTTGGAAATATTATAGAAGAGATTGAGAAAACTGACAGGCTTTCTCAGAAGAAAATAAGTTCTGAGAGGCACAACTTGAAACAAACTGAGGCGTTGAAGGTAAAGACCAACAGACAGAGGCAACCACATCATCTAAGCAGAGAACTTCAGAGGAAGAAACCAAAGCCAAGCTCTAGCGTCAAAATACATTCTCCAAGGATGGTTTCCAAGGTTGAAATCTGCAAAATAAAGGCTCTAGAAGACAAGAGGAAAGCAAAactaaagatgaagaaagaaagGGAGGAAACACCAGGATTAGAGAGCTTTGCTGTGATCAAGCGTTCATTAGATCCAAAGCAAGATTTCAGAGATTCAATGATTGAGATGATCATGGAGAATCAGATTAGCCAACCAATAGAAATGGAAGAGCTGTTGGCATGTTATCTGACTTTGAATGCAGATGAGTATCATGATCTCATCATCAAAGTGTTCCGGCAGGTATGGTTTGACATGAGCCAAGGTTTTTTGGGTATTAAACCAGATATGCAATGTTGTTGCTATGAATAA 1206 0.3574 MMKWGGRKPSSASGSSFISYASPFSWLPMFKQMRINSESSARKMKQKAKQSASPQYSCEYGDRFCVKDDGAFGRQPFNEESYEDKKNKDIGENVIPSSSCHGDRRDAKKHGRREGTLKLKEKDIGQGEERKLLNDGKVSKEMDEFNREKEYENLRRRFERRAQKAFQEQLLTLERKVEEVEFGSSKAVEEKDVLQIESPRTICTPRTNAFASSTVSKNSILGNIIEEIEKTDRLSQKKISSERHNLKQTEALKVKTNRQRQPHHLSRELQRKKPKPSSSVKIHSPRMVSKVEICKIKALEDKRKAKLKMKKEREETPGLESFAVIKRSLDPKQDFRDSMIEMIMENQISQPIEMEELLACYLTLNADEYHDLIIKVFRQVWFDMSQGFLGIKPDMQCCCYE 401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g0607 401 MobiDBLite consensus disorder prediction 235 283 - -
Ssu1g0607 401 Coils Coil 148 168 - -
Ssu1g0607 401 PANTHER TRANSCRIPTION REPRESSOR OFP4 13 387 - -
Ssu1g0607 401 Coils Coil 295 315 - -
Ssu1g0607 401 MobiDBLite consensus disorder prediction 235 264 - -
Ssu1g0607 401 TIGRFAM A_thal_3678: uncharacterized plant-specific domain TIGR01568 322 384 IPR006458 -
Ssu1g0607 401 Pfam Transcriptional repressor, ovate 328 384 IPR006458 -
Ssu1g0607 401 PANTHER TRANSCRIPTION REPRESSOR OFP7-RELATED 13 387 IPR038933 GO:0045892
Ssu1g0607 401 MobiDBLite consensus disorder prediction 76 115 - -
Ssu1g0607 401 ProSiteProfiles OVATE domain profile. 324 383 IPR006458 -
Ssu1g0607 401 MobiDBLite consensus disorder prediction 99 115 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g0607 Ssu-Chr1 13613667 13614872 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF OFP Ssu1g0607 Ovate 9.6e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g0607 - - gmx:102666239 590.497
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g2506 5 68944815 68946032 Ssu1g0607 1 13613667 13614872 PCT