Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g0606 ATGGCTTCAGGGGCAATTTTCTCGTCGCTCCGGCGGAGAAGGTCGCCAACGTTGGAAGCGTTTCTGGCCCCCGTTGACTTAAACGACGTCGCTTTGGTTCAGACCCTCGTCGCCGTCGCGAGCGAGATTGTGTCGTGTTTTTCGAAGCGTCGTTTCTTCTTCCAGCGCAAGAACTGGCGGTCTCTGATCCTAAGGGTCGAGGCTTTTCAGCTGCTTTTGGAGTATTTGGGCAATTCCGATTCGGGTTCGTGTCTTCCCCCTACGGCGGTGCTTTGTCTCAAGGAGCTCTACCTCTTGCTCTACCGCTCCAAGATTCTCCTCGATTACTGCGCCCAGTCGAGTAAGTTGTGGCTCCTGCTTCAGAACCATTCCATCTCTGGTCACTTCCACGATTTGAACCAGGAGATTTCGACCCTTCTGGATGTTTTTCCCGTTAAGGATGTCGGGTTGAGTAAGGATGTTAGGGAGCAGGTTGAGCTCTTGCAGAGGCAGTCCAGGAGGGCTAAGCTTTTTATTGACATGAAGGACGATGCTCTCAGGGTTCggtttttttcctttcttgaaGAGTTTGAGAATGGAAGGATTCCTGATTCTGCTGAATTGAGGTCTTTCTATGTTGAGAAGTTGCAGATTCTGGATGCAGGTAGTTGTAGGACTGAAATTGAGGCTTTGGAGGAGCAGATTGTTAATCACGAGGGTGACATTGAGCCTACTATTTCTGTGCTTAATGGGTTGGTGGCTATGACTAGGTATTGCAGGTTTTTGCTTTTTGGGTTTGAGGAGGATGAGCTTGGTTTCGAGAGTGGGATTCGGAAGAAGCCTAAGAAGAGGTTGATTACTCAGGAGATTGCTGAAACGTTTTTGACTGTTCCTAAGGACTTTTACTGTCCGATATCGTTGGATTTGATGAGAGACCCGGTGATAATTTCCACCGGTCAAACTTATGATAGGAGTTCGATTTCGAGGTGGATGGAAGAAGGGCATACTACATGCCCCAAAACAGGTCAAATGCTTGCTCACACTCGGCTTGTTCCCAACCGGGCTCTGAGGAATTTGATTGTGCAGTGGTGCACTGCACATGGAGTTCCTCTTGAGCCACCGGAGATCATGGATGCGATGGATGAAGGTTTTGCGTCGGCTTGTCCTACCAAAGCTGCCCTTGAAGCCAACAGAGCCACGGCGACACTTCTCATTCAACAGCTCGCGGATGGGTCTCAAGCTGGGAAGACTGTGGCTGCTCGGGAGATTCGGTTGCTTGCGAAGACTGGGAAGGAAAACCGCGCCTTCATTGCAGAAGCAGGGGCGATTCCTCATCTTCGGAATTTACTTTCATCGCCCAATGCTGTTGCTCAGGAGAATTCTGTGACTGCACTGCTCAATCTGTCTATTTTTGACAAGAACAAAAGTAGGATCATGGATGAGGAAGGGTGTCTACGATCAATTGTTGATGTGTTGAGATTTGGACACACCACAGAGGCAAGGGAAAATGCTGCTGCGACATTGTTCAGCCTATCGGCTGTCCATGACTATAAGAAAATAATCGCAGATGAGGCGGGAGCAGTTGAGGCCCTTGCAGGGCTGTTGCAAGAGGGGACTCCAAGAGGAAAGAAGGATGCTGTGACAGCTTTGTTCAATCTTTCCACACACACTGAGAATTGTGTTAGAATGATAGAGGCTGGGGCAGTGACAGCCCTTGTTGGTGCTTTGGGGAATGAAGGAGTTGCAGAAGAAGCGGCCGGTGCACTGGCCTTGATCGTCCGGCAGCCTGTTGGGGCCAAAGCAGTTGTGAACGAGGAAGCAGCAGTGGCTGGATTAATCGGAATGATGCGTTGTGGAACGCCGAGAGGTAAAGAGAATGCGGTTGCAGCATTGCTTGAGTTGTGCCGGAGTGGAGGTGCGGCTGCAACAGAAAGAGTTGTGAAGGCGCCAGCTTTGGCTGGATTACTTCAAACCCTTCTTTTCACGGGGACAAAACGGGCAAGAAGAAAAGCAGCTTCCCTTGCAAGAGTGTTTCAGAGAAGTGAGAATGCAGCTTTACACTATGGTGGATTAGGTGTAGGCTATGCGTTTGCTAGCAATTCAACTACAACTAGGGATACCAGCTTTGCCGGTGATGTTTCAGTACCAATGTCAATTTCTGTTTTATAG 2148 0.4912 MASGAIFSSLRRRRSPTLEAFLAPVDLNDVALVQTLVAVASEIVSCFSKRRFFFQRKNWRSLILRVEAFQLLLEYLGNSDSGSCLPPTAVLCLKELYLLLYRSKILLDYCAQSSKLWLLLQNHSISGHFHDLNQEISTLLDVFPVKDVGLSKDVREQVELLQRQSRRAKLFIDMKDDALRVRFFSFLEEFENGRIPDSAELRSFYVEKLQILDAGSCRTEIEALEEQIVNHEGDIEPTISVLNGLVAMTRYCRFLLFGFEEDELGFESGIRKKPKKRLITQEIAETFLTVPKDFYCPISLDLMRDPVIISTGQTYDRSSISRWMEEGHTTCPKTGQMLAHTRLVPNRALRNLIVQWCTAHGVPLEPPEIMDAMDEGFASACPTKAALEANRATATLLIQQLADGSQAGKTVAAREIRLLAKTGKENRAFIAEAGAIPHLRNLLSSPNAVAQENSVTALLNLSIFDKNKSRIMDEEGCLRSIVDVLRFGHTTEARENAAATLFSLSAVHDYKKIIADEAGAVEALAGLLQEGTPRGKKDAVTALFNLSTHTENCVRMIEAGAVTALVGALGNEGVAEEAAGALALIVRQPVGAKAVVNEEAAVAGLIGMMRCGTPRGKENAVAALLELCRSGGAAATERVVKAPALAGLLQTLLFTGTKRARRKAASLARVFQRSENAALHYGGLGVGYAFASNSTTTRDTSFAGDVSVPMSISVL 715
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g0606 715 SUPERFAMILY RING/U-box 279 363 - -
Ssu1g0606 715 Gene3D - 393 669 IPR011989 -
Ssu1g0606 715 Coils Coil 214 234 - -
Ssu1g0606 715 CDD RING-Ubox_PUB 294 336 IPR045210 -
Ssu1g0606 715 Pfam Armadillo/beta-catenin-like repeat 424 462 IPR000225 GO:0005515
Ssu1g0606 715 SUPERFAMILY ARM repeat 395 674 IPR016024 -
Ssu1g0606 715 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 289 363 IPR013083 -
Ssu1g0606 715 ProSiteProfiles U-box domain profile. 289 363 IPR003613 GO:0004842|GO:0016567
Ssu1g0606 715 SMART Ubox_2 293 356 IPR003613 GO:0004842|GO:0016567
Ssu1g0606 715 Gene3D - 27 146 IPR036537 GO:0007166
Ssu1g0606 715 SMART arm_5 423 463 IPR000225 GO:0005515
Ssu1g0606 715 SMART arm_5 549 587 IPR000225 GO:0005515
Ssu1g0606 715 SMART arm_5 589 629 IPR000225 GO:0005515
Ssu1g0606 715 SMART arm_5 465 506 IPR000225 GO:0005515
Ssu1g0606 715 SMART arm_5 508 548 IPR000225 GO:0005515
Ssu1g0606 715 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 434 476 IPR000225 GO:0005515
Ssu1g0606 715 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 17 12 697 - -
Ssu1g0606 715 Pfam U-box domain 290 360 IPR003613 GO:0004842|GO:0016567
Ssu1g0606 715 PANTHER U BOX DOMAIN-CONTAINING 12 697 - -
Ssu1g0606 715 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 519 561 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g0606 Ssu-Chr1 13589697 13591844 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g0606 1 714 U-box Gene Family AT1G29340 71.409 0.0 969
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g0606 - - gmx:100811153 1220.68
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g0606 1 13589697 13591844 Ssu1g0606 1 13589697 13591844 ECH
Ssu5g2505 5 68927208 68928761 Ssu1g0606 1 13589697 13591844 PCT