Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g0602 ATGACTAGGGCTGTCCGCAGTAGGGTACTTAAAGATGCCAATGGTGATATTAGTGATCATCTACGCAACCACATCCATTTGACAAATTGTATTCACCTGAAGAACCATATGCACAAGAACAGCCCCATACTGGCTGATAGGTCAATCATGAGGGACCTAGTTGCGCTGCAGAGATCGCGGTCTCTTAGAGACCCTTCTGCAAGTCCTCCATCATGGCACTCACCTTCTGTAGTTGACTTGCTTTTCAAAAGAGTAGAAAATGATGCCGCATCTCAAGGGGGAAGAAGGTCTGTAGGTGTCGAGCGAAGGAAGGAAGGGAGAAGATTGTCTGGAACCTCACCACCCTTGGTGAGTATAGGTTCATCTAGAGTTGCTCCGGGTGAGGTTGGTAGGGGTAATGATGGGATAACGGCGCCTAGTGAACGTAGTAGCAGGAGCGGAATGGGAGATGGAAGGAGAGTTGGGAGAGAAGAATCTGGCAGGAAGAATGATGGGCCAGACTTTTTGGATGTTAATCAAGAGGAGCCTGTCAATCTGGCTGGCAAAAGTTTGGCTGAGGATGTTATTTCAAGGCACTCCGAGCCTAAAGATAGAAAGAGCAAACAGAGGGGGAAGAATGTTCGAGATGCTCAAGTTAAGACCCTTTCTGAGCAGCTGAATGACGTTCCATTGGATAGTGATGATTTAGCATCATCAAACATTCATTTTCGTGGAAGGTTTCCAAGACAGGAGAAAATTATTGAGGAGGCAGAAGCCCAGATGCGCATTCATGGCAGTGGAATGAATAAGGGGAAAAGGCGTAAGTTTCGAAGCGGGCGAAGAACTCGGGTTGCTACAACATCAAGAGATATTGGAGCTGAGAATGAGCTGTCTGTGGCTTCCAACTCATTAGCTCAGGCTTCAGCTCACCAGAAATATCACTTGGAGGATGCTGATGAGTTCGCAGATGAAAATGTTACTAGGGCTCCAAAAAATGGGTGTGGCATTCCTTGGAATTGGTCCAGAATTCATCATAGAGGTAAAACATTCCTTGACATGGCTGGAAGAAGTTTCTCTTGTGGTTTATCTGACTCAAGGTTGAAGAGAGGGACGTTTGCTGCCAATGGAAGAAATATTTCTGAGATGCCTATGGCATCTGAGCACTCAAGCTCATGTACCAAGTCTGATGCAGAGGCACTGCCTTTACTAGTTGAGGCATCTGGATCTCACGCAAGCACTGAAAATGCTTGTTGGGGTCATGACTATTCTGGGGAACTAGGTCTTTTTGGTGATAATTTATTCAAGCATGATATTGATTCTGACCTCGCTTCTGAAGCTAGATCTGGTGATCAGCGTAAGTTGAGAGGGAATCGTCACAGTAGACACCAAAGTTTAACACAAAAGTATATGCCTCAAACCTTCAGAGATATGGTTGGGCAGAATTTAGTGGCACAAGCTCTTTCCAACGCCGTTATGAAAAGGAAAGTtggattgttgtatgtgtttTATGGTCCCCATGGCACTGGAAAAACTTCCTGTGCTCGCATATTTGCCAGAGCTCTGAATTGTAATTCTTCAGAACACCCAAAACCTTGTGGCTTTTGCAATTATTGCATAGCACATGATATGGGCAAGAGTAGAAATATAAGGGAAATAGGTCCAGTTAGTAATTTTGACTTTGAGAGCATCATGGACCTACTTGACAATATGATCATTTCCCAGCTTCCGTCACATTACAGAGTGTTTATTTTTGATGACTGTGATACTCTGTCAACGGATTGTTGGAATGCTATATCGAAGATCATTGATCGAGCACCTAGACGTGTGGTTTTTATCCTTGTCAGTTCAAGTCTTGATGTGTTGCCTCATATAATAATATCCAGGTGTCAAAAATTCTTTTTCCCAAAGCTGAAGGATGCAGATATTATATGTACACTGCAGTGGATTGCAACCAAAGAAGGTCTAGAAATTGATAAGGATGCCCTGAAACTCATTGCATCAAGGTCAGACGGATCATTGAGAGATGCTGAGATGACCCTTGAACAACTTAGTTTGCTTGGGCAGAGAATATCAGTTCCTCTTGTTCAGGAACTGGTAGGGCTAATCTCTGATGAGAAATTGGTGGATCTGCTTGATTTGGCATTATCTGCAGACACAGTTAACACCGTAAAGAATTTGAGAGTGATCATGGAAACTGGTGTCGAGCCATTGGCTTTAATGTCACAACTTGCTACAGTAATTACTGACATACTTGCTGGGACCTATGATTTTACAAAAGAAAGGCGAAGAAGGAAGTTCTTCCGAAGACAACCACTGTCCAAAGAAGACATGGAAAAGCTGCGCCAAGCTCTGAAAACTTTATCTGAGGCTGAGAAGCAGTTGAGGATGTCCAATGACAAGCTAACATGGTTGACAGCTGCCTTACTTCAGCTTGCTCCGGACCGGCAATATGTGTTGCCTACTTCATCTGATAATAGTTTCAACCATAGTCCCTTTGCTCTAAAAGATGCAGATGCGAGAGAAGCAGCTAGAGTGACTGGTAATCCTGTTGACATTCCTAACAAAGCGAGACGATTATCAATGGATGCTagaattgaaaatttcaatGCTGGAAGCTCTGCAGAGGGTATGACGAAGGGTCTTGGTGCTGAGAAAAACCGACATAGTGTGTCTGGTTTTACTCCTCAACAACGTGCTCATTCGCAAGCCACTGATAAGATTAGGATGAATGAGAGGCAGATTTTGGGTAAAAACCTTAAAGAAATTGACGAGATATGGTTAGAGGTGCTTGAGAGGATACGAGTTACTGGTCTGAAAGAGTTTCTGTTTAAAGAAGGCAAGCTGATCTCTGTTAGTTTTGGGGCAGCTCCAACTGTGCAGCTAATGTTTAGTTCTCAACCGAAAAAATCTACTGCTGAGAAGTTTAGAGGTCATATCTTACAAGCGTTTGAATCTGTCCTTGGATCTTCTATAACAATAGAAATTAGATGCGAGTCAAATAAAGATGCAGGCTCAGCTGTTCAACTGCCTCTTACATTGCCTACTACCAATGATAGTTTGTCTCAGATTAGAGAGTCTAATGGTGCTGGCACTCTAGCTCATCCATCACTAACTGATTCTATTGAAAAGAGAAGGGGTGAAATTGTAGAAGAAGTAGCTTCTCAAGTGGAGCACAAGAATAATGAGCAGCAGGTTGATGCTCGTGGAACTTCTTATAAAAGTTTGGAAGGTACAAGTATAGGACAAGCATCAGCTTCCCAAAAAAGGCCAATTGGTAAGTCACATTTAGACCAAAGAAAGCTTATGGAGCAAGGTCAAAGTCGAAGTCTTGTAAGAAGCAAAGTATCTCTTGCTCATGTAATCCAGCAGGCAGAAGGTCAGAGAAGTGGGTGGTCAAAACGTAAAGCAGTTTCTATTGCTGAGAAGCTTGAACAAGAGAATCTGAGACTGGAGCCAAGATCAAGGAGCTTACTATGCTGGAAAGCATCAAGAGTAACCCGGCGAAAGCTGTCACGCTTGAAAATTCGAACCAGAAAACCACGTGCACTGCTGAATCTTGTCTCATGTGGGAAATGTCTGTCTACAAAATCTCCAAGGTAG 3579 0.43 MTRAVRSRVLKDANGDISDHLRNHIHLTNCIHLKNHMHKNSPILADRSIMRDLVALQRSRSLRDPSASPPSWHSPSVVDLLFKRVENDAASQGGRRSVGVERRKEGRRLSGTSPPLVSIGSSRVAPGEVGRGNDGITAPSERSSRSGMGDGRRVGREESGRKNDGPDFLDVNQEEPVNLAGKSLAEDVISRHSEPKDRKSKQRGKNVRDAQVKTLSEQLNDVPLDSDDLASSNIHFRGRFPRQEKIIEEAEAQMRIHGSGMNKGKRRKFRSGRRTRVATTSRDIGAENELSVASNSLAQASAHQKYHLEDADEFADENVTRAPKNGCGIPWNWSRIHHRGKTFLDMAGRSFSCGLSDSRLKRGTFAANGRNISEMPMASEHSSSCTKSDAEALPLLVEASGSHASTENACWGHDYSGELGLFGDNLFKHDIDSDLASEARSGDQRKLRGNRHSRHQSLTQKYMPQTFRDMVGQNLVAQALSNAVMKRKVGLLYVFYGPHGTGKTSCARIFARALNCNSSEHPKPCGFCNYCIAHDMGKSRNIREIGPVSNFDFESIMDLLDNMIISQLPSHYRVFIFDDCDTLSTDCWNAISKIIDRAPRRVVFILVSSSLDVLPHIIISRCQKFFFPKLKDADIICTLQWIATKEGLEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQRISVPLVQELVGLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGTYDFTKERRRRKFFRRQPLSKEDMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQLAPDRQYVLPTSSDNSFNHSPFALKDADAREAARVTGNPVDIPNKARRLSMDARIENFNAGSSAEGMTKGLGAEKNRHSVSGFTPQQRAHSQATDKIRMNERQILGKNLKEIDEIWLEVLERIRVTGLKEFLFKEGKLISVSFGAAPTVQLMFSSQPKKSTAEKFRGHILQAFESVLGSSITIEIRCESNKDAGSAVQLPLTLPTTNDSLSQIRESNGAGTLAHPSLTDSIEKRRGEIVEEVASQVEHKNNEQQVDARGTSYKSLEGTSIGQASASQKRPIGKSHLDQRKLMEQGQSRSLVRSKVSLAHVIQQAEGQRSGWSKRKAVSIAEKLEQENLRLEPRSRSLLCWKASRVTRRKLSRLKIRTRKPRALLNLVSCGKCLSTKSPR 1192
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g0602 1192 MobiDBLite consensus disorder prediction 260 280 - -
Ssu1g0602 1192 CDD HLD_clamp_pol_III_gamma_tau 630 693 IPR045085 -
Ssu1g0602 1192 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 492 677 IPR027417 -
Ssu1g0602 1192 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 180 1159 - -
Ssu1g0602 1192 TIGRFAM dnaX_nterm: DNA polymerase III, subunit gamma and tau 456 804 IPR012763 GO:0003887|GO:0005524|GO:0006260|GO:0009360
Ssu1g0602 1192 Gene3D - 631 693 - -
Ssu1g0602 1192 MobiDBLite consensus disorder prediction 260 275 - -
Ssu1g0602 1192 Gene3D - 448 627 IPR027417 -
Ssu1g0602 1192 MobiDBLite consensus disorder prediction 146 169 - -
Ssu1g0602 1192 MobiDBLite consensus disorder prediction 438 457 - -
Ssu1g0602 1192 MobiDBLite consensus disorder prediction 877 897 - -
Ssu1g0602 1192 CDD AAA 471 630 - -
Ssu1g0602 1192 PANTHER PROTEIN STICHEL-LIKE 3 180 1159 - -
Ssu1g0602 1192 SUPERFAMILY post-AAA+ oligomerization domain-like 701 804 IPR008921 GO:0003677|GO:0006260
Ssu1g0602 1192 Coils Coil 766 793 - -
Ssu1g0602 1192 MobiDBLite consensus disorder prediction 187 210 - -
Ssu1g0602 1192 MobiDBLite consensus disorder prediction 1071 1091 - -
Ssu1g0602 1192 MobiDBLite consensus disorder prediction 882 896 - -
Ssu1g0602 1192 Pfam DNA polymerase III, delta subunit 473 630 - -
Ssu1g0602 1192 SMART AAA_5 489 630 IPR003593 -
Ssu1g0602 1192 Pfam DNA polymerase III subunits gamma and tau domain III 686 804 IPR022754 GO:0003887
Ssu1g0602 1192 MobiDBLite consensus disorder prediction 89 211 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g0602 Ssu-Chr1 13333739 13340052 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g0602 456 754 Core DNA Replication Machinery Family AT1G21690 24.252 4.47e-13 70.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g0602 - - gmx:100809005 2145.55
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g0602 1 13333739 13340052 Ssu1g0602 1 13333739 13340052 ECH