Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g0595 ATGGGAGCAGTGAGTGATGGAAACCGCAGCAGAAAGAAGCCATCATCAAGAGGGCACCACAGGTTTGTGGGGGTTCGACAAAGGCCATCAGGGAGATGGGTGGCAGAGATCAAAGACTCTCTACAGAAGGTTAGGCTTTGGCTTGGAACATTCGACACTGCTGAGGATGCAGCTCGGGCATATGACAATGCTGCTCGAGCTTTGAGAGGTGCCAATGCTAGAACCAACTTTGAATTGCCAGAGTCATCAACTTCTGGTGGTGCTACTAagcgtggtggtggtggtggttccAGCTTCATGCCTGATTGCATCGAACCCTTTTCTTTTGAGGATGTCAATGAGCCAGGTGCAGAAGCAGAAGGCCTTCTCGGTGCACTTAAGGCCAAGCTGCTTGACATAAAGAAAGGGAAGTTTCACTTTCCATTTCTTGATAATTGTGCTGCCCCAGTTGTTCAATCTGGCATGGTTTCAAGATCAATTCAGAACTGTTCTGGGAGGAAAGAGTTATTATTACCATCATCAGCTAATAATACTGTCCTCTCAAGGATGAATGGAACTGGAACCAACCCTGTGCATGGTGTAATGAGTACTACTTTAACTTCATCAAACACTTGTGCTAAGAGTGTGCTTGTCCCGCATCATGATCATGAAGGTGCTGTAGCAAGCAGTACTAGAGTCAACTCTCATCCACTTTTCCAAACCCCACATATGGAAAACATGACATGGCCCAGTGAAGTGGCATGTGAATTGCCTTGGCCAACACTCATGAGCCAAGTTCCTGATAATAGTCTGCTTGCATCTGCCAGTGCAGCCACCTTGACATGGCCACTTTCTGGGGTAATTGAGTCCACTGTTGATATGACATGCACAGATCAGGGACCATCAAGTAACAACAAAAGTGGCCAAATGAATATGGTGAGCATGCAGTTGCCTCTAGTTGGTGGTGCAACTGAAGCCCTTTGGACATTGGAGCAGCAACAATTTGTGCAATGTGAGAACAACAGTTGGTTTAGTTATAATGGCTCTTGGGATCCTTTCCTCTATGTGCCCTCAGAGCTATCTTGA 1065 0.4526 MGAVSDGNRSRKKPSSRGHHRFVGVRQRPSGRWVAEIKDSLQKVRLWLGTFDTAEDAARAYDNAARALRGANARTNFELPESSTSGGATKRGGGGGSSFMPDCIEPFSFEDVNEPGAEAEGLLGALKAKLLDIKKGKFHFPFLDNCAAPVVQSGMVSRSIQNCSGRKELLLPSSANNTVLSRMNGTGTNPVHGVMSTTLTSSNTCAKSVLVPHHDHEGAVASSTRVNSHPLFQTPHMENMTWPSEVACELPWPTLMSQVPDNSLLASASAATLTWPLSGVIESTVDMTCTDQGPSSNNKSGQMNMVSMQLPLVGGATEALWTLEQQQFVQCENNSWFSYNGSWDPFLYVPSELS 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g0595 354 MobiDBLite consensus disorder prediction 1 25 - -
Ssu1g0595 354 MobiDBLite consensus disorder prediction 76 91 - -
Ssu1g0595 354 PRINTS Ethylene responsive element binding protein signature 44 60 IPR001471 GO:0003700|GO:0006355
Ssu1g0595 354 PRINTS Ethylene responsive element binding protein signature 22 33 IPR001471 GO:0003700|GO:0006355
Ssu1g0595 354 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR LEP 2 349 - -
Ssu1g0595 354 SMART rav1_2 21 84 IPR001471 GO:0003700|GO:0006355
Ssu1g0595 354 Gene3D AP2/ERF domain 20 79 IPR036955 GO:0003700|GO:0006355
Ssu1g0595 354 CDD AP2 21 78 IPR001471 GO:0003700|GO:0006355
Ssu1g0595 354 ProSiteProfiles AP2/ERF domain profile. 21 78 IPR001471 GO:0003700|GO:0006355
Ssu1g0595 354 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 2 349 - -
Ssu1g0595 354 SUPERFAMILY DNA-binding domain 22 78 IPR016177 GO:0003677
Ssu1g0595 354 MobiDBLite consensus disorder prediction 75 97 - -
Ssu1g0595 354 Pfam AP2 domain 21 70 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g0595 Ssu-Chr1 13203015 13204079 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g0595 9 77 AP2-EREBP Transcription Factor Family AT5G19790 67.143 1.92e-26 103
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Ssu1g0595 AP2 3.2e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g0595 - - gmx:102661478 498.049