Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g0594 ATGAAGATTACTTGTGATGAATGGAAACCTTTTATAGTAATGATAgcaattgatttttcttttgcgGCAGTGAATATTCTTCTGAAGAAAGTCCTTGAAGAAGGAATGAACCATTTGGTTTTCATCACATACCGGCTGTCAATTGCTACCATTTTCATAGCCCCAATCGGCTACTTTAGGGAAAGAAACGGCAGACCACGGCTGACATTTCGAGTTTTATGTTACCTCTTCATCAGTGCTATTGTTGCGGCATCAGTCACTCAATACTTTTTCCTTCTGGGGATCCAATATACCTCTGCTACCTTTGCTTGTGCTTTCATCAACATGGTGCCTGTGGTCACATTCATGATGGCATTACCATTTGGGTTAGAGACCGTGAAAATCAAATGCAACAGTGGGAGAGCCAAGATTCTTGGTTCATTGGTGTGCATAGGCGGTGCATTGATGTTGACTCTTTACAAAGGAAAGccactatttaatttttctcgTTATGAATCTGCAGCTCCTGTGGTCAAGAGTGCAGTGAAGCTAGCTTCTACAAGGACAACGGAGAGATGGACTTTTGGTGTAATAGCGTTGGTTTTGGGAACCCTCTTTTGGTCTTCTTGGTTTATCTTACAATCAAAAATAAGCAAGAGATATCCATGCCAGTGTTCTAGCACAGCCATCATGACCTTCTTTGGAGCCATTCAATCAGCTGTTATTTGCTTGTTCACTGACCACAACTTGTCCATTTGGGTTCTCAAGGGAAATATACAAATCATTGCTATTCTATATGCTGGGATGATTGGATCGGGTTTGTGTTTTGTGGGCATGTCGTGGTGTGTGAAGAAGAGGGGTCCGGTCTTCACTGCAGCATTCAGCCCTCTTGTTCAGATAATGGCAGCCATGATTGATATCCCTGTCTTGCATGAGCAGCTCCATCTTGGAAGTTTGATGGGATCCATCTTGGTGATGACTGGATTGTACATTCTCCTATGGGGTAAGAGCATGGAAATGCAGAATCGTGTGATCAAGTTAGTCCAAGAAGCTGAAGAAACCAAGGAACAAGAGCCGCAACCGCAAATACAACAGTTGACAGTGTATGTTCGTGCAGAATCGTGTGATTCGCAGTGCCACTGA 1122 0.418 MKITCDEWKPFIVMIAIDFSFAAVNILLKKVLEEGMNHLVFITYRLSIATIFIAPIGYFRERNGRPRLTFRVLCYLFISAIVAASVTQYFFLLGIQYTSATFACAFINMVPVVTFMMALPFGLETVKIKCNSGRAKILGSLVCIGGALMLTLYKGKPLFNFSRYESAAPVVKSAVKLASTRTTERWTFGVIALVLGTLFWSSWFILQSKISKRYPCQCSSTAIMTFFGAIQSAVICLFTDHNLSIWVLKGNIQIIAILYAGMIGSGLCFVGMSWCVKKRGPVFTAAFSPLVQIMAAMIDIPVLHEQLHLGSLMGSILVMTGLYILLWGKSMEMQNRVIKLVQEAEETKEQEPQPQIQQLTVYVRAESCDSQCH 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g0594 373 SUPERFAMILY Multidrug resistance efflux transporter EmrE 255 330 - -
Ssu1g0594 373 Pfam EamA-like transporter family 12 150 IPR000620 GO:0016020|GO:0016021
Ssu1g0594 373 Pfam EamA-like transporter family 188 326 IPR000620 GO:0016020|GO:0016021
Ssu1g0594 373 SUPERFAMILY Multidrug resistance efflux transporter EmrE 44 154 - -
Ssu1g0594 373 PANTHER WAT1-RELATED PROTEIN 10 349 - -
Ssu1g0594 373 Coils Coil 330 350 - -
Ssu1g0594 373 PANTHER WAT1-RELATED PROTEIN 10 349 IPR030184 GO:0016021|GO:0022857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g0594 Ssu-Chr1 13193506 13196051 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g0594 6 334 Nodulin-like Gene Family AT1G11460 39.394 1.83e-88 268
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g0594 - - gmx:100803670 685.256
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g2488 5 68510709 68513048 Ssu1g0594 1 13193506 13196051 PCT