Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g0586 ATGGATCAAGACAGAAGGGAAGGTAGAGATGAGGTATTGGATTCGGTTCATGAAGGGGTAGATGGGAATTTGAATCATTTTGTTGAAGGAGTTGTAATTGATGCAGTAGATGGGAGCAGCTTGGGTGGCTGTGCTAGTATAAGTGGAGAAGCTGGAACTCCAGGAGTGATTGGTAAGGATTTGGGATCTGATAAGGAGCTAAAGGAGGGGCTTGAGGAAGTTAAGGGTCTGGACAAGCATGATCAAGAAAAAATCAGTGATAAATTGCTTGGGGTTGATCAGGGaactatttataattcaaaCCATTCGGTTAATCGGGAAGTAATTGAAACTGTGGTTGTAATTGAGTCTGTTCAGACTGAGTATGTCCATGAAGATAATAGGAAATTGGAAGGAGAAGTTAATGAATCAGGGTTGAGCTTGGTATCCATGAAAGCACCAGAAGGAGTGTCTGAAACTGATAAAAATTCATGTGTGATTGATATAAAGTGCAGCAGCCACAAAAAGTTTTATGAGAATTCTGAAGGTGAAAAGATTTGTAGGATTTGCCATCTGGCTTCTGTGCAACCATCGGATGAAACAACTGTTGGCACTGCTACAAGTGTAGATTTGATTCAGCTTGGCTGTGCGTGTAAAGATGAGCTAGGCATTGCACACGTTCATTGTGCTGAGGTGTGGTTCAAGCTTAAGGGGAACAGGTTATGTGAAATATGTGGTGAGACTGCAAAAAATGTTTCGGTGTTACTAATAATGCATTTATGGATAAGTGGAACGAAAGAAGATTCATGGACAACGATGGTAACTCATCCCGCAGGTTTGGTGGATGCTGGAGAGGACAGCCATTTTGTAACTTCTTGA 858 0.4114 MDQDRREGRDEVLDSVHEGVDGNLNHFVEGVVIDAVDGSSLGGCASISGEAGTPGVIGKDLGSDKELKEGLEEVKGLDKHDQEKISDKLLGVDQGTIYNSNHSVNREVIETVVVIESVQTEYVHEDNRKLEGEVNESGLSLVSMKAPEGVSETDKNSCVIDIKCSSHKKFYENSEGEKICRICHLASVQPSDETTVGTATSVDLIQLGCACKDELGIAHVHCAEVWFKLKGNRLCEICGETAKNVSVLLIMHLWISGTKEDSWTTMVTHPAGLVDAGEDSHFVTS 285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g0586 285 PANTHER E3 UBIQUITIN-PROTEIN LIGASE MARCH-RELATED 1 248 - -
Ssu1g0586 285 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 163 247 IPR013083 -
Ssu1g0586 285 PANTHER ZINC FINGER, RING-CH-TYPE 1 248 - -
Ssu1g0586 285 ProSiteProfiles Zinc finger RING-CH-type profile. 172 245 IPR011016 GO:0008270
Ssu1g0586 285 SUPERFAMILY RING/U-box 174 241 - -
Ssu1g0586 285 SMART ringv_2 179 239 IPR011016 GO:0008270
Ssu1g0586 285 Pfam RING-variant domain 180 238 IPR011016 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g0586 Ssu-Chr1 13053406 13055901 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g0586 160 245 C3H Transcription Factor Family AT5G05830 44.186 9.76e-18 77.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g0586 - - gmx:100791720 358.221
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g2484 5 68454187 68457208 Ssu1g0586 1 13053406 13055901 PCT