Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g0585 ATGCTTTTCCAGAAGCTCAGAACTTGTATTCCTAGTagaaaagtttcaaattttcttgTTCCCCAGTACTTGAATCGGATTTTTCGTTTCATGGAAGATGCCAAAGTGGTTGCTTGGCTCGTTTCACTCTTTCTGTGTTGTTGGATGCCAATGGTTGTTGAGGGCACTGACAGCCTTCTCTCTCCAAAGGGTGTCAACTATGAAGTGGCTGCTTTGATGTCCATGAAGAGTAAGATGAATGATGACTTACATGTCATGGATGGTTGGGATATTAATTCGGTTGACCCTTGTACTTGGAACATGGTTGGTTGCTCTGCCGAGGGTTATGTTATTTCCCTGGAAATGGCCATTGCGGGTTTATCTGGAACGATTTCCTCAGGAATTGGAAATTTGAGCCACCTACAAACATTGTTATTGCAGAACAATCAATTATCTGGTCCTATCCCCACTGAGATCGGAAAGCTGTTAGAGCTTCAAACCCTTGACCTTTCTGGTAACCAGCTTCATGGGGAAATTCCTAATTCTTTGGGCTTTTTGACTCATCTTAGTTACTTGCGGCTCAGCAAAAATAAACTATCTGGACAGATCCCTCAACTTGTTGCTAATCTCACAGGCCTTTCATTCTTGGACTTGTCCTTCAATAATCTCAGTGGTCCCACTccaaaaattttagcaaaagTGGAGCAAGATTGTGAATTTGATATTGGCCATTTGAAGAGGTTCTCCTTCCGTGAATTGCAAATTGCTACTGgaaatttcaattcaaaaaatatcCTAGGACAAGGTGGTTTTGGTGTTGTCTACAAAGGATGCCTTGCAAACAAAATGTTGGTGGCAGTAAAGAGGCTGAAAGATCCCAATTACACTGGAGAAGTGCAGTTTCAAACAGAAGTTGAGATGATCGGCTTGGCTGTGCATCGGAACCTCTTGCGTCTTTATGGATTTTGTATGACACCAGATGAAAGGTTACTTGTTTATCCTTACATGCCCAATGCCAGTGTTGCTGATCGCTTGAGAGAGACTTGCCGTGAAAAGCCATCGTTGGACTGGAACAGGCGAATGCGTGTTGCTCTTGGGACAGCGCGCGGGCTTCTATATTTGCATGAACAGTGCAATCCGAAAATTATCCACAGGGATGTTAAGGCTGCAAACATTTTGTTAGATGAAAGTTTTGAAGCTGTGGTGGGGGATTTTGGTCTTGCTAAGCTCTTAGATCAAAGGGATTCACATGTAACTACTGCAGTGCGGGGTACTGTAGGGCACATTGCCCCAGAATATCTCTCAACTGGACAGTCTTCTGAGAAAACAGATGTTTTTGGATTTGGCATATTGCTTTTGGAGCTCATAACAGGACACAAGGCACTGGATGCTGGAAACGGTCAGGTCCAAAAGGGAATGATTCTTGATTGGGTTAGAACCTTATTTGAGGAGAAACGCCTGGAAGTGTTAGTCGACAGGGATCTTAGGGGATGTTTTGATCCAGTGGAGTTAGAGAAAGCAGTGGAATTGTCTTCACAGTGTACTCAGTCGCTTCCCACTCTGCGGCCAAAGATGTCAGAGGTTTTGAAGATTCTAGAAGGTCTCGTAGGGCAGTCAGTGCGGCCAGAGGAGTCACAAGGGGGGCCTAACCTATATGATGAAAGAACTTGCAGTTTCTCACAAAATTATAGTGATGTTCATGAAGAACCTTCCTTTATTATTGAAGCCATTGAGCTTTCTGGACCTCGGTGA 1731 0.4269 MLFQKLRTCIPSRKVSNFLVPQYLNRIFRFMEDAKVVAWLVSLFLCCWMPMVVEGTDSLLSPKGVNYEVAALMSMKSKMNDDLHVMDGWDINSVDPCTWNMVGCSAEGYVISLEMAIAGLSGTISSGIGNLSHLQTLLLQNNQLSGPIPTEIGKLLELQTLDLSGNQLHGEIPNSLGFLTHLSYLRLSKNKLSGQIPQLVANLTGLSFLDLSFNNLSGPTPKILAKVEQDCEFDIGHLKRFSFRELQIATGNFNSKNILGQGGFGVVYKGCLANKMLVAVKRLKDPNYTGEVQFQTEVEMIGLAVHRNLLRLYGFCMTPDERLLVYPYMPNASVADRLRETCREKPSLDWNRRMRVALGTARGLLYLHEQCNPKIIHRDVKAANILLDESFEAVVGDFGLAKLLDQRDSHVTTAVRGTVGHIAPEYLSTGQSSEKTDVFGFGILLLELITGHKALDAGNGQVQKGMILDWVRTLFEEKRLEVLVDRDLRGCFDPVELEKAVELSSQCTQSLPTLRPKMSEVLKILEGLVGQSVRPEESQGGPNLYDERTCSFSQNYSDVHEEPSFIIEAIELSGPR 576
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g0585 576 Pfam Protein kinase domain 254 523 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu1g0585 576 Pfam Leucine Rich Repeat 158 179 IPR001611 GO:0005515
Ssu1g0585 576 Pfam Leucine rich repeat N-terminal domain 66 105 IPR013210 -
Ssu1g0585 576 ProSitePatterns Protein kinases ATP-binding region signature. 259 281 IPR017441 GO:0005524
Ssu1g0585 576 Gene3D Phosphorylase Kinase; domain 1 228 328 - -
Ssu1g0585 576 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 39 226 - -
Ssu1g0585 576 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 226 576 - -
Ssu1g0585 576 ProSiteProfiles Protein kinase domain profile. 253 529 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu1g0585 576 ProSiteProfiles Leucine-rich repeat profile. 157 180 IPR001611 GO:0005515
Ssu1g0585 576 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 39 226 - -
Ssu1g0585 576 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 226 576 - -
Ssu1g0585 576 SUPERFAMILY L domain-like 67 239 - -
Ssu1g0585 576 Gene3D Transferase(Phosphotransferase) domain 1 329 533 - -
Ssu1g0585 576 SMART serkin_6 253 524 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu1g0585 576 SUPERFAMILY Protein kinase-like (PK-like) 237 551 IPR011009 -
Ssu1g0585 576 Gene3D Ribonuclease Inhibitor 67 227 IPR032675 -
Ssu1g0585 576 ProSitePatterns Serine/Threonine protein kinases active-site signature. 375 387 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g0585 Ssu-Chr1 13041064 13045759 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g0585 73 576 Receptor kinase-like Gene Family AT5G45780 63.966 0.0 694
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-II Ssu1g0585 Pkinase 1.5e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g0585 - - ccaj:109812711 910.212
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g0585 1 13041064 13045759 Ssu1g0585 1 13041064 13045759 ECH