Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g0581 ATGGACCCCTTTCGCACATTCTTGATTCTCCTGGCGCTCGTTGTTCTCGTGGAATCCTCGTGCAAAAACGAAGAGCAGGAGCTGGTGTCAAAGGTCTTCCAATCTGTGTCTGGATTCAACGCTTCCTGGTTCCAAAAAAATGGTTCCACTTCCAACTGTTCTAATGCTGGGATTAAAGGGATAAATCTTGCATCCAAAAACCTAAGTGGGAGCATCTCATGGAAGCATCTGAGGAACATGTCAAAGTTGGAGGTTCTGGATCTGTCTGGGAATTCTCTACAAGGCCAGGTCCCAAACTGGTTTTGGACAAGCTCAACCTTAATGGTACTAAACCTTTCCAACAACAGGTTCGGAGGAAGCATTAACCCCACTTCAAAAAACGGTTCCGTTTCATCACTACAAACGCTCAATCTCTCCCACAACAGGTTCACCAACCTACTTCACCTCTCTGCTTTCTCAAACCTTAAAAGCCTCGACCTTTCGCACAACAATCTCGGAACCTTGCCTTCAGGGTTCCAGAACCTCACCAATCTACACTACCTCGATCTCTCCAACTGCAACATCAAAGGAAACGTAAAACCCATCTCTTCCCTCACCTCACTTTCCTACTTGGACCTATCAAGCAACACTTTGAACGGTAGTTTCCCCTCCGACTTCCCTCCCCTAAACACCATCCAATTCTTGAACATCTCCCACAATAGCTTCAAAGCCTCCACCACCTTAGACAGGTTCAAGAAATTCGGCAAATCAGCGTTCATTCACGCCGGCAACAACTTCAACTTCGACTACAACGCATCCAAAACGCCAAAGCTTCGTTCAAGTTCAAGTTCAACCCCACCACATCACCAGCCCCACATGACAAACCCCAAACCCATTCACGcggaaaagaagaagaggccaaagcaaaaacaaaagtcaaaaCACAAAACCAGAATCATGATTGCGGCCCTGTCCTGTGCCTCGGCACTTGTCGTTGTCGGGTTGTGCATGTGCGCGGTGTGGTGTTGCAGAAGGAAGAGGCAATTGGCGAAAAGGAACAAATGGGCCATTTCGAAGCCGGTCCCATTGAGCATCAAGATGGAGAAATCGGGACCGTTCGCGTTCGAGACCGAGTCAGGGACATCCTGGGTGGCGGACCTCAAGGAACCCTCGTCCGCACCCGTGGTCATGTTCGAGAAGCCACTCATGAACCTCACCTTCGTCGACCTCATCGCTGCCACGTCACACTTCGGCAAAGACTCTCTCCTCGCGGACGTAAGGTGTGGGCCCGTTTATCGCGCTGTCTTGCCCGGAGACATCCACGTGGCAATCAAAGTCCTCGAAAACGCCAGAGACGTTGATCATGATGACGCTGTCGCTCTCTTCGTTAACCTCTCCCAACTTAAACACCCCAATCTGCTACCTCTCTCCGGTTACTGTATTGCAGGTAAGGAGAAGCTGGTATTGTACGAGTTTATGTCGAACGGGGATTTAGGTAGGTGGCTGCAGGAGCTACCAACGGGGGAGACTAACGTGGAGGATTGGAGTGGCGACACGTGGGAGATTATTCAAAACGGCGCCGTTTCTCGAGCCTCGCCCTCGGAAAAGATGGGGGCGTTGGACGAGAGGCTCAAACTCGGTGGCGGCGACTCGGATGGTGAGATGGTGGAGAGCCTCCGAGTCGCGTATTTGTGCACGGCCGAGTCGCCGGGTAAGAGGCCCACCATGCAGCAGGTGTTGGGCCTACTCAAAGATATTCATCCGAGTCATGGACTCGACTGA 1761 0.502 MDPFRTFLILLALVVLVESSCKNEEQELVSKVFQSVSGFNASWFQKNGSTSNCSNAGIKGINLASKNLSGSISWKHLRNMSKLEVLDLSGNSLQGQVPNWFWTSSTLMVLNLSNNRFGGSINPTSKNGSVSSLQTLNLSHNRFTNLLHLSAFSNLKSLDLSHNNLGTLPSGFQNLTNLHYLDLSNCNIKGNVKPISSLTSLSYLDLSSNTLNGSFPSDFPPLNTIQFLNISHNSFKASTTLDRFKKFGKSAFIHAGNNFNFDYNASKTPKLRSSSSSTPPHHQPHMTNPKPIHAEKKKRPKQKQKSKHKTRIMIAALSCASALVVVGLCMCAVWCCRRKRQLAKRNKWAISKPVPLSIKMEKSGPFAFETESGTSWVADLKEPSSAPVVMFEKPLMNLTFVDLIAATSHFGKDSLLADVRCGPVYRAVLPGDIHVAIKVLENARDVDHDDAVALFVNLSQLKHPNLLPLSGYCIAGKEKLVLYEFMSNGDLGRWLQELPTGETNVEDWSGDTWEIIQNGAVSRASPSEKMGALDERLKLGGGDSDGEMVESLRVAYLCTAESPGKRPTMQQVLGLLKDIHPSHGLD 586
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g0581 586 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 532 586 - -
Ssu1g0581 586 ProSiteProfiles Leucine-rich repeat profile. 154 176 IPR001611 GO:0005515
Ssu1g0581 586 Gene3D Ribonuclease Inhibitor 130 315 IPR032675 -
Ssu1g0581 586 Pfam Leucine rich repeat 132 188 IPR001611 GO:0005515
Ssu1g0581 586 Pfam Leucine rich repeat 66 117 IPR001611 GO:0005515
Ssu1g0581 586 SUPERFAMILY L domain-like 51 238 - -
Ssu1g0581 586 PRINTS Leucine-rich repeat signature 155 168 - -
Ssu1g0581 586 PRINTS Leucine-rich repeat signature 198 211 - -
Ssu1g0581 586 PANTHER KINASE, PUTATIVE-RELATED 532 586 - -
Ssu1g0581 586 Gene3D Ribonuclease Inhibitor 25 129 IPR032675 -
Ssu1g0581 586 SMART LRR_typ_2 152 174 IPR003591 -
Ssu1g0581 586 SMART LRR_typ_2 80 103 IPR003591 -
Ssu1g0581 586 SMART LRR_typ_2 198 221 IPR003591 -
Ssu1g0581 586 SMART LRR_typ_2 130 149 IPR003591 -
Ssu1g0581 586 Gene3D Phosphorylase Kinase; domain 1 370 485 - -
Ssu1g0581 586 MobiDBLite consensus disorder prediction 270 307 - -
Ssu1g0581 586 ProSiteProfiles Leucine-rich repeat profile. 132 153 IPR001611 GO:0005515
Ssu1g0581 586 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 3 533 - -
Ssu1g0581 586 SMART tyrkin_6 422 576 IPR020635 GO:0004713|GO:0006468
Ssu1g0581 586 PANTHER KINASE, PUTATIVE-RELATED 3 533 - -
Ssu1g0581 586 Pfam Protein tyrosine and serine/threonine kinase 421 506 IPR001245 GO:0004672|GO:0006468
Ssu1g0581 586 SUPERFAMILY Protein kinase-like (PK-like) 387 499 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g0581 Ssu-Chr1 12993291 12995741 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g0581 61 509 Receptor kinase-like Gene Family AT5G07280 30.670 2.42e-44 167
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VII-2 Ssu1g0581 PK_Tyr_Ser-Thr 2.6e-08 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g0581 - - gmx:100778920 870.152
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g0581 1 12993291 12995741 Ssu1g0581 1 12993291 12995741 ECH
Ssu5g2478 5 68366889 68370273 Ssu1g0581 1 12993291 12995741 PCT