Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g0580 ATGGCCGACGTCGTTTCGAAGAGCCCCGCCAGCAGCCTCGTGAGCGCGAACAAGAAGGAGCCGTCGAACCTGTTGCTGGGCCGGTTCGAGACCGGGAAGCTGCTGGGCCACGGAACCTTCGCGAAGGTGTACTACGCGCGGAACGTGAAGACCGGCGAAGGCGTGGCCATCAAGGTAATCGACAAGGAGAAGATCCTGAAAGGCGGGCTGGTGGCCCACATCAAGCGCGAGATCTCCATCCTCCGGCGCGTGCGCCACCCCAACATCGTGCAGCTCTTCGAGGTCATGGCCACCAAGAGCAAGATCTATTTCGTCATGGAGTACGTCCGCGGGGGCGAGCTCTTCAACAAGGTCGCCAAAGGGAGGCTCAAGGAGGAGGTCGCGAGGAAGTACTTCCAGCAGCTGATCTCCGCCGTCGGGTTCTGCCACGCCCGTGGGGTCTACCACAGGGATCTCAAACCCGAGAACCTGTTGCTCGACGAGAACGGGAACCTTAAGGTCTCCGATTTCGGGTTGAGCGCGGTGTCCGATCAAATCAGACAGGACGGGCTGTTCCACACGTTTTGCGGCACGCCCGCTTATGTTGCCCCCGAGGTTCTGGCCAGGAAGGGGTACGATGGTGCCAAGGTTGATCTCTGGTCTTGCGGGGTCGTCTTGTTCGTGTTGATGGCCGGGTATTTGCCTTTCCACGACCAGAATGTTATGGCAATGTATAAGAAGATTTACCGAGGGGAGTTTCGGTGTCCCAGGTGGTTTTCTCCTGATTTGTCTAGACTTCTCACGAGGCTTCTTGACACCAAGCCTGAAACAAGGATTGCGATTCCCGAGATCATGGAGAACAAGTGGTTCAAGAAAGGGTTCAAGCAGATTAAGTTTTACGTGGAGGATGATAGGCTTTGCAATGTGGATGATGATGAGCTTCTGGATAATGAGGACGACACGGCTTCGATTGCTTCTATGTCGGATTATTCCGTGTCGGAGTCCGACTCTGAGATTGAGACTCGGAGGAAGAATGCTCCCTTGCCTAGACCTCCTAGTCTGAATGCTTTTGACATTATATCGTTCTCTCCCGGTTTTGATCTTTCTGGGTTGTTTGAGGAGAAAGGGGACGAGACCAGGTTTGTGACTGCTGCGCCGGTTTCGAGGATTATTTCCAAGTTGGAGGAGATTGCTCAGTTGGTGAGGTTTACCGTGAGGAAGAAGGATTGCAGGGTGAGTCTGGAGGGTACCCGAGAGGGGGTGAAGGGGCCTTTGACTATTGCTGCTGAGATTTTTGAGTTGACGCCTTCTTTGGTTGTGGTGGAGGTGAAGAAAAAGGGAGGGGACAGGGCCGAGTATGAGAGCTTTTGTAACAATGAGTTGAAGCCCGGGCTGCAGAATTTGGTGGCCGAGGAGTCTGCTACTTCTTCGGGGTTGTCTACACCTACTCAGCCTTCCCTACTGCGTGGCCTTTCTGAACCTGTGCCGGATATTTCTTCGGATATTGAAACCGCACGCTATATACCTTCTGATACTTGA 1518 0.5402 MADVVSKSPASSLVSANKKEPSNLLLGRFETGKLLGHGTFAKVYYARNVKTGEGVAIKVIDKEKILKGGLVAHIKREISILRRVRHPNIVQLFEVMATKSKIYFVMEYVRGGELFNKVAKGRLKEEVARKYFQQLISAVGFCHARGVYHRDLKPENLLLDENGNLKVSDFGLSAVSDQIRQDGLFHTFCGTPAYVAPEVLARKGYDGAKVDLWSCGVVLFVLMAGYLPFHDQNVMAMYKKIYRGEFRCPRWFSPDLSRLLTRLLDTKPETRIAIPEIMENKWFKKGFKQIKFYVEDDRLCNVDDDELLDNEDDTASIASMSDYSVSESDSEIETRRKNAPLPRPPSLNAFDIISFSPGFDLSGLFEEKGDETRFVTAAPVSRIISKLEEIAQLVRFTVRKKDCRVSLEGTREGVKGPLTIAAEIFELTPSLVVVEVKKKGGDRAEYESFCNNELKPGLQNLVAEESATSSGLSTPTQPSLLRGLSEPVPDISSDIETARYIPSDT 505
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g0580 505 ProSitePatterns Serine/Threonine protein kinases active-site signature. 147 159 IPR008271 GO:0004672|GO:0006468
Ssu1g0580 505 CDD STKc_SnRK3 28 282 - -
Ssu1g0580 505 MobiDBLite consensus disorder prediction 465 481 - -
Ssu1g0580 505 SMART serkin_6 29 283 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu1g0580 505 Gene3D Transferase(Phosphotransferase) domain 1 19 339 - -
Ssu1g0580 505 ProSitePatterns Protein kinases ATP-binding region signature. 35 58 IPR017441 GO:0005524
Ssu1g0580 505 PANTHER - 12 468 - -
Ssu1g0580 505 MobiDBLite consensus disorder prediction 465 490 - -
Ssu1g0580 505 SUPERFAMILY Protein kinase-like (PK-like) 25 284 IPR011009 -
Ssu1g0580 505 PANTHER NON-SPECIFIC SERINE/THREONINE PROTEIN KINASE 12 468 - -
Ssu1g0580 505 Pfam Protein kinase domain 29 283 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu1g0580 505 ProSiteProfiles Protein kinase domain profile. 29 283 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu1g0580 505 CDD CIPK_C 348 459 - -
Ssu1g0580 505 Pfam NAF domain 344 400 IPR004041 GO:0007165
Ssu1g0580 505 Gene3D Kinase associated domain 1, KA1 342 463 - -
Ssu1g0580 505 ProSiteProfiles NAF domain profile. 342 366 IPR018451 GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g0580 Ssu-Chr1 12962257 12963774 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g0580 18 505 CBL-interacting serine-threonine protein kinases AT4G18700 77.189 0.0 765
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Ssu1g0580 Pkinase 6e-73 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g0580 - - gmx:100790133 922.154
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g0580 1 12962257 12963774 Ssu1g0580 1 12962257 12963774 ECH