Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g0578 ATGGAAAATTTAGGACTAGCTTTGTTAGAGTTTCGAGCGACAATAACTTCTGATCCGTACAATGCTTTGGTGAATTGGAATCCCAATGATTGTGACCCTTGCAAATGGGTGGGTGTTCATTGTGTAGATGATAAAGTGCACATGTTGGAGTTAAAAGAGCTATCTTTGGAAGGGACATTGGCTCCTGAGCTTGGGAAACTTAGTCACCTAAATTCTCTTGTGTTAAGCAAGAATAACTTTTTTGGTACCATTCCCAAAGAACTTGGAGATTTACCCAAGCTAGAGTTATTGGATTTAAGGGAGAATAACTTGTCAGGAAGCATCCCAAAGGAAATTGGCAAGATGTCATTACTAAAACATTTTGTGTGGCAGAGCAACTTCAAACAATGGAACAAATCAAATGCATTGGTTATTCTAACTAAAGCAACACTTATGAAATGCCTCAATGCTTTTGTATTTCCATTGTATAAAAGCCTGCCTTTCATCGGCCAGGAAGAGGATTACTGTGACCTTCTGCCAAGTTCTTATGTGCCAGAGATTACCCAAAACATACCAGAACTTGTGAATTCTGCACGTCGTAAGTTACTTCAGTCCAGTAGCAGTAACCTTGTAGCTGCACCTTTTAATGGTGGACCAATTATAGAGTTCAGTTCTATTCCAACTACCCTTAGTACTGGAGCTTTCCCAGCAATTCTAGATGCcaataagaaacaaaatcagTCACCTACACCTTTGCATTCACCTTCTGATTCTCCACACGATGCTTCCAATGGAAATCAAACAAGTCAACAACATGCAACTAATGGTGCTTCTGGAAAGTTGTGGAAGCATATAATTagtattgttattgttgtgttaATCATTGTTATCATAATTCTTTTATACATTTGGCGAAAACGAGCTGTAAAAGTAATAAGCCCTTGGAAAACAGGAATAAGTGGACAATTAcagaaagcatttataacagGGGTCCCCAAGTTGAATCGATCAGAATTAGAGACAGCTTGTGAGGATTTCAGCAATATTGTTCTTAGTAGTTATGAAGGGTGCATCGTCTACAAAGGAACATTGTCTAGTGGAGTTGAGATTGCTGTTGTTTCTACTCTAATTACTTCTTCCCAAGATTGGTCTAAGAACATGGAGCTGAACTACCGCAAAAAGATTGATACTTTTTCCCGCATAAAccataaaaactttattaatcTTATTGGATATTGTGAGGAAGAAGAACCATTCACAAGGATGTTGGTGTTTGAGTATGCTCCAAATGGAATTTTATTTGAGCATCTGCATGTTAAGGAAATGGAACGTCTTGATTGGAGTGAAAGGGTAAGGATTATCATGGGCATTGCGTATTGTCTTCAGTATATGCACCATGATTTGAATCCACCAGTGCCTCAGGGTAACCTTActtcaaatatgatttttttaacgGATGATTTTGCTGCTAAGATTGCagaagttacttttagaaatatTGTGTCACCAGCTAAGACAATAAGTGATTCAAAGAAATTTGAGGTGTCATCCCAGGACGGTATTGAAACCAATGTCTATGACTTTGGGATGTTATTGCTTGAAATCATCTCAGGGAAATTGCCCTTCTCTGAAGAACAAGGCAACCCCTTGAACTTGGTTACTGAGTGCTTAAATGATAAGAGAAGTATCAGCTATATGATTGATCCCACCCTACAGTCTTTTAAGGACAATGAACTTGATGTCATCTGTGAGGTAATCCAAGATTGTATCCAACCTGATCCAAAGTTAAGACCAACAATGAGGGGCGTGACTTCCAAATTGAGGGAAGTGCTTGGTGTGTCACCTGAGCAAGCAGTCCCAAGACTTTCTCCACTCTGGTGGGCTGAATTGGAGATCTTGTCAGTGGAGGCGACTTAA 1896 0.3745 MENLGLALLEFRATITSDPYNALVNWNPNDCDPCKWVGVHCVDDKVHMLELKELSLEGTLAPELGKLSHLNSLVLSKNNFFGTIPKELGDLPKLELLDLRENNLSGSIPKEIGKMSLLKHFVWQSNFKQWNKSNALVILTKATLMKCLNAFVFPLYKSLPFIGQEEDYCDLLPSSYVPEITQNIPELVNSARRKLLQSSSSNLVAAPFNGGPIIEFSSIPTTLSTGAFPAILDANKKQNQSPTPLHSPSDSPHDASNGNQTSQQHATNGASGKLWKHIISIVIVVLIIVIIILLYIWRKRAVKVISPWKTGISGQLQKAFITGVPKLNRSELETACEDFSNIVLSSYEGCIVYKGTLSSGVEIAVVSTLITSSQDWSKNMELNYRKKIDTFSRINHKNFINLIGYCEEEEPFTRMLVFEYAPNGILFEHLHVKEMERLDWSERVRIIMGIAYCLQYMHHDLNPPVPQGNLTSNMIFLTDDFAAKIAEVTFRNIVSPAKTISDSKKFEVSSQDGIETNVYDFGMLLLEIISGKLPFSEEQGNPLNLVTECLNDKRSISYMIDPTLQSFKDNELDVICEVIQDCIQPDPKLRPTMRGVTSKLREVLGVSPEQAVPRLSPLWWAELEILSVEAT 631
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g0578 631 SUPERFAMILY Protein kinase-like (PK-like) 350 599 IPR011009 -
Ssu1g0578 631 Gene3D Phosphorylase Kinase; domain 1 313 420 - -
Ssu1g0578 631 Pfam Leucine rich repeat N-terminal domain 6 41 IPR013210 -
Ssu1g0578 631 Gene3D Ribonuclease Inhibitor 6 122 IPR032675 -
Ssu1g0578 631 SUPERFAMILY L domain-like 7 129 - -
Ssu1g0578 631 ProSiteProfiles Protein kinase domain profile. 217 604 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu1g0578 631 MobiDBLite consensus disorder prediction 237 267 - -
Ssu1g0578 631 PANTHER PROTEIN MALE DISCOVERER 2 2 631 - -
Ssu1g0578 631 Gene3D Transferase(Phosphotransferase) domain 1 421 611 - -
Ssu1g0578 631 PANTHER LRR RECEPTOR-LIKE KINASE 2 631 - -
Ssu1g0578 631 Pfam Protein tyrosine and serine/threonine kinase 352 600 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g0578 Ssu-Chr1 12911485 12916507 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g0578 5 605 Receptor kinase-like Gene Family AT2G42290 25.762 1.51e-45 169
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VI-2 Ssu1g0578 PK_Tyr_Ser-Thr 2.3e-16 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g0578 - - gmx:100788002 922.539
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g0578 1 12911485 12916507 Ssu1g0578 1 12911485 12916507 ECH
Ssu1g0578 1 12911485 12916507 Ssu5g2474 5 68284451 68290513 ECH