Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g0576 ATGTCAGAAGGAAACGAGATTCATAACAACGAGGAAACTTCATCGGGATGTTCCCAGAAATACTCTTCCTTTGACTTGAATGAAGAATTAGCTTGCAGTGAAGATAACAGTGATACAGAAGAATACTATGAGCTCACAACTAAGGAGTATGAGAAAGCAAAGGATGAGAGCACTTCAGCAAAAGGAAGTAGTACATCAAGACAAGGAAATGAGGGAAGAGGTACGGTGAGACAATATGTTAGATCCAAGATGCCTCGGCTTCGGTGGACTCCTGAGCTTCATCATTCATTTGTGCATGCTATTGAAAGACTTGGCGGTCAAGAGaGAGCAACACCTAAGTTGGTGCTTCAACTAATGAACGTGCGAGGACTCAGCATTGCTCATGTCAAGAGTCACTTGCAGATGTATCGAAGCAAGAAACTTGACGAGGCTGGGCAAGTACTAAGTCAAGCGCACAGGTCGAACCAAGAAGTAGGTCGTAGATCTCTGATACTCCATCAGCCCATGAGTGCTCATCAACACTTTAAGATGGGGAATGGTGGAATTATTCTAGCAAGTAATTTCAACAAACATAGTCATTTCCCAAGTCTCCTGCAGCCCTCCTTCTCCCTATCACGTTCACATTCAAACGACACCGATTCAAGGCACCAGCATTGGTACATCAATCATCAAGCTTTTAGAATACCAATAGCTTCAGGCCATATTCAACCAAAGGATACACGCGGAAGAATTGCACCAATGAGACCAAGCCAATTGCTTGAAGAGAAAAGGTGGCCTCCTTTAGAAATTATGAACAATCATCAATCGAAGTTCAAAAGGTTGCCTGCCAGTGTTGCTCCTAAAAATGGGTCACAATCTGTTCAGCCAGCTGAATGGAGTTTTGTGAACAACACAAGCATCAGAGAATACCTGTCGATCAACTCCAATGAACATCGCAACTATTCCAACAGTTTAAAGCTAGAATTTGATCCCCCATTTCGGATTAAGTTGAATCAAGAGAAACTGCAGAAAGACGAGCAACAATTGCCTGATTTGCAACTGGGTTTGAGTCACACAGTTGGAACCGATGATGAAATCAACACTAAGCTTTCACTTTCTTAG 1101 0.4269 MSEGNEIHNNEETSSGCSQKYSSFDLNEELACSEDNSDTEEYYELTTKEYEKAKDESTSAKGSSTSRQGNEGRGTVRQYVRSKMPRLRWTPELHHSFVHAIERLGGQERATPKLVLQLMNVRGLSIAHVKSHLQMYRSKKLDEAGQVLSQAHRSNQEVGRRSLILHQPMSAHQHFKMGNGGIILASNFNKHSHFPSLLQPSFSLSRSHSNDTDSRHQHWYINHQAFRIPIASGHIQPKDTRGRIAPMRPSQLLEEKRWPPLEIMNNHQSKFKRLPASVAPKNGSQSVQPAEWSFVNNTSIREYLSINSNEHRNYSNSLKLEFDPPFRIKLNQEKLQKDEQQLPDLQLGLSHTVGTDDEINTKLSLS 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g0576 366 Gene3D - 84 141 - -
Ssu1g0576 366 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 81 141 IPR017930 -
Ssu1g0576 366 MobiDBLite consensus disorder prediction 1 20 - -
Ssu1g0576 366 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL7-LIKE 1 365 IPR044848 GO:0003700
Ssu1g0576 366 PANTHER MYB-LIKE DNA-BINDING DOMAIN, SHAQKYF CLASS PROTEIN 1 365 - -
Ssu1g0576 366 SUPERFAMILY Homeodomain-like 83 139 IPR009057 -
Ssu1g0576 366 MobiDBLite consensus disorder prediction 59 75 - -
Ssu1g0576 366 MobiDBLite consensus disorder prediction 31 78 - -
Ssu1g0576 366 Pfam Myb-like DNA-binding domain 87 137 IPR001005 -
Ssu1g0576 366 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 85 140 IPR006447 GO:0003677
Ssu1g0576 366 MobiDBLite consensus disorder prediction 41 58 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g0576 Ssu-Chr1 12858484 12861347 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g0576 76 156 G2-like Transcription Factor Family AT2G42660 69.136 1.02e-32 121
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Ssu1g0576 Myb_DNA-binding 6.7e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g0576 - - gmx:100787474 570.081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g0576 1 12858484 12861347 Ssu1g0576 1 12858484 12861347 ECH
Ssu5g2475 5 68326656 68335578 Ssu1g0576 1 12858484 12861347 PCT