Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g0567 ATGCCGGACTTCCACGACTCGATCTCGCCGCCGTCGCGCCCCGTCCCCGTGCGCGAGGACTGCTGGTCCGAGGAGGCCTCCGCCACGCTCGTCGACGCCTGGGGCCGCCGCTACCTCGAGCTCAACCGCGGCAACCTCCGCCAGAAGGACTGGCAGGACGTCGCCGACGCCGTCAACGCGCTCCACGGTCACACCAAGAAGACGCACCGCACCGACGTCCAGTGCAAGAACCGCATCGACACCATCAAGAAGAAGTACAAGGTCGAGAAGGCTAGGGTTTCGTCCTCCAACGGCGCTCTCTCTTCCCCTTGGCCTTTCTTCGAGCGCTTGGACGCTCTCATCGGCCCCAATTTCAACGCCAAGAaatcctcttcctctccctcgCCCTCGCCGCCGGTGGCTCTTCCCTTACTGCCGCATCGGAAGAACCCTTCCTCCCAGGCGATTGCGGTGCCGCCGACGGCCGTGGCGCTGCCGCAGAAGCGCTCCGCGGCTGCGGCGGCCATGGATGAGAGTTACTTCAGGAGGAATTACTCCGCTGTGGCCGCGGCTGCGGCGGCGGCGGAGGCCgatgaggaggaggaggaggaggaggaggaggaagaggaggaggaggaggaggtggaggtggaggaagaGGGTGAGGATGAAGGGAGAGGGAGCGAAGTGGAGGAAGGGGAGAAGGGGAGGGAAGGGATGACGAGGTTGGCGAAGGCGATAGAGAGGTTTGGGGAAGTGTATGAGAGAGTGGAGGGGCAGAAGCTGAGGCAGATGGTGGATTTGGAGAAACAGAGGATGCAGTTCGCGAAAGATCTTGAAGTGCAGAGGATGCAGATGTTTATGGACACACAGGTTCAGCTGGAGAGAATTAAGCGCGGGAAACGATCTGGGTCTAACGATATGTATAGCTAG 912 0.5614 MPDFHDSISPPSRPVPVREDCWSEEASATLVDAWGRRYLELNRGNLRQKDWQDVADAVNALHGHTKKTHRTDVQCKNRIDTIKKKYKVEKARVSSSNGALSSPWPFFERLDALIGPNFNAKKSSSSPSPSPPVALPLLPHRKNPSSQAIAVPPTAVALPQKRSAAAAAMDESYFRRNYSAVAAAAAAAEADEEEEEEEEEEEEEEEEVEVEEEGEDEGRGSEVEEGEKGREGMTRLAKAIERFGEVYERVEGQKLRQMVDLEKQRMQFAKDLEVQRMQMFMDTQVQLERIKRGKRSGSNDMYS 303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g0567 303 Pfam Myb/SANT-like DNA-binding domain 19 113 IPR044822 -
Ssu1g0567 303 MobiDBLite consensus disorder prediction 184 234 - -
Ssu1g0567 303 PANTHER OS05G0560600 PROTEIN 10 299 - -
Ssu1g0567 303 MobiDBLite consensus disorder prediction 120 146 - -
Ssu1g0567 303 Coils Coil 180 216 - -
Ssu1g0567 303 MobiDBLite consensus disorder prediction 188 220 - -
Ssu1g0567 303 PANTHER TRIHELIX TRANSCRIPTION FACTOR ASIL2 10 299 IPR044823 -
Ssu1g0567 303 Gene3D - 22 88 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g0567 Ssu-Chr1 12756031 12761728 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g0567 18 302 Trihelix Transcription Factor Family AT3G14180 33.239 3.02e-47 162
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Ssu1g0567 Myb_DNA-bind_4 1.9e-24 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g0567 - - gmx:100815241 445.277
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g0567 1 12756031 12761728 Ssu1g0567 1 12756031 12761728 ECH