Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g0555 ATGTCAACTCCTTCATCGTCGTCATCTTCTTCTATCTGGGTGTTGTCTAACATACAGCTTCAGTTCTTTACCCGCATCAGACGGTTTCTCCAATCCAAAGCAACCAGAAAGCGTTGTGAACCCTCTGATCGATTTGACACAGCTAAGAGCAGAGGTGAACACAGCAAGAAGGTTGAAAATCTTGAAACAGTTCAAGTTATGGAGAAGCATAAGGAGGAGGAAAAGTCTGCAATCATGTTGCAGAGAACTGTGAAGATGCTTCACTTTGGAAGCTGGGAAGAGAAAGAGGTGGCAGCAAAGGAGATTGATAAGTTAGCCAAGGAAGACGTTAAGGTTAGAAAGTCGATAACAGAACTTGGGGTGGTGCCAGTGTTGGTATCTATGGTGGCGTCGCCGGTGGCTAGCCGCCGGCGAGCAGGGTTAACGGCGTTGATCAATCTAGCTGATGGAACTTACACGAACAAGGCTTTGATAGTGGAGGCAGGAATATTGTCCAAGCTGCCTAGGACAATTGACCCAGTAGATGAATCAATGAGAAGTAAATTGGCAGAGTTGCTTTTGTCATTGTCATCTCTAGCAAACCCTCATGAATTCCTGCTTGCATCATTAGACTTTCTCCCATTACTTAGAAACATTCTTGAGACAGGCTCAAGTTTTGACACCAAGCAATATTGTTTGGGTGCCTTGTATAATCTATCAACTGTGTTAGAGAATGCAGGCCCTTTGGTTTCAAGTGGGGTGGTCCCTATCCTCTTGGAACTGTCCTCAGTAAAAGAAATTTCAGAGAAAGCACTTGCCACTCTAGGGAACTTGTCAGTGACTTTGATGGGGAAAAAAGCAATAGAGAACAGCTCAATGGTGCCAGAAAGCTTTATTGAGATATTGTCATGGGAAGATAAACCCAAATGCCAAGAGTTGTCAGTGTATATTTTGATGATTCTAGCACATCAAAGTTCAttgcaaagaaagaaaatgatacaGGCTGGGATTGTTCCTGTACTTCTTGAAGTGGTCTTATTGGGGAGCCCTTTGGCTCAGAAGAGAGCACAGAAACTATTGCAATGGTTTAAGGATGAAAGGCAAACAAAGATGGGGCCACATTCTGGTCCACAAACACCAAGATTTGCAATGGGGTCACCGGTAAATCAAAGAGAagcaaaagaagggaagaaattGATGAAGAGTTTGGTGAAACAAAGTTTGCATAGGAATATGGAAATAATAACGCAAAGGGCAAATGCAGCAGGGGAGTCTTCTAAATTGAAGTCTTTGATTATTAGTACAAGTTCCAAGAGTTTGccttattaa 1308 0.4151 MSTPSSSSSSSIWVLSNIQLQFFTRIRRFLQSKATRKRCEPSDRFDTAKSRGEHSKKVENLETVQVMEKHKEEEKSAIMLQRTVKMLHFGSWEEKEVAAKEIDKLAKEDVKVRKSITELGVVPVLVSMVASPVASRRRAGLTALINLADGTYTNKALIVEAGILSKLPRTIDPVDESMRSKLAELLLSLSSLANPHEFLLASLDFLPLLRNILETGSSFDTKQYCLGALYNLSTVLENAGPLVSSGVVPILLELSSVKEISEKALATLGNLSVTLMGKKAIENSSMVPESFIEILSWEDKPKCQELSVYILMILAHQSSLQRKKMIQAGIVPVLLEVVLLGSPLAQKRAQKLLQWFKDERQTKMGPHSGPQTPRFAMGSPVNQREAKEGKKLMKSLVKQSLHRNMEIITQRANAAGESSKLKSLIISTSSKSLPY 435
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g0555 435 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 67 435 - -
Ssu1g0555 435 SMART arm_5 193 234 IPR000225 GO:0005515
Ssu1g0555 435 SMART arm_5 151 191 IPR000225 GO:0005515
Ssu1g0555 435 SMART arm_5 109 149 IPR000225 GO:0005515
Ssu1g0555 435 SMART arm_5 235 273 IPR000225 GO:0005515
Ssu1g0555 435 Gene3D - 54 419 IPR011989 -
Ssu1g0555 435 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 67 435 - -
Ssu1g0555 435 SUPERFAMILY ARM repeat 80 356 IPR016024 -
Ssu1g0555 435 MobiDBLite consensus disorder prediction 362 388 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g0555 Ssu-Chr1 12422541 12425892 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g0555 93 373 U-box Gene Family AT1G67530 31.597 6.17e-21 94.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g0555 - - gmx:100819002 708.368
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g0555 1 12422541 12425892 Ssu1g0555 1 12422541 12425892 ECH