Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g0540 ATGTGTTGCTGCTCTGAAGACTGTAAATGCAGGCCTCTTGGGTTTTTGTTGGGCCTGCCTTTTGCCTTCTTGTCTCTCCTCATCTCCCTTGTGGGTGTGGTTGTTTGGATCGTTGGTGGCGGACAGCACATTCCAATGAGGTCAGTTTCTGAACAGCGATGGATTGCAACGGTAATTACATTCGTGATAGCTTCTTCGGCATCGTTATTGGCGGCGTGCCCCTACACCTCCATCTTCAGCTTCGGCGATTCCCTCGCCGACACCGGCAACTTGTATCTCAGCTCCCACCACCCACCCTCCGACCACTGCTTTTTCCCTCCCTACGGCGAAACCTACTTTCACCATGTCTCTGGACGCTGCTCCGATGGCCGCCTCATTATCGATTTCATCGCTGAGTCTCTGGGAATTCCGCCGGTGAAACCGTACATGGGAATCAAGAACAGTGGAGGATGGAGTGTGGAAGGGGGAGCGAATTTTGCTGTTATAGGAGCCACGGCGTTGGACTTCAGCTTCTTTGAAGAAAGGGGCATTCCTATCCCAACTAATTATTCTTTGACAGCTCAATTGAATTGGTTCAGGGAATTGCTTCCTGCTCTCTGCAATTCTTCCACGAACTGCCATGAAGTTGTTGGAAACTCATTATTTCTTATCGGTGAAATTGGAGGAAATGATTTCAATTATCCTTTGTTTCTACGAAAGAGCGTAGCAGAGGTTAAAACATATGTGCCATATGTAATCAACGCAATATCTTCGGCTATTAAcgAGTTGATTGGTCTAGGGGCCCGCACGCTTATGGTTCCTGGGAATTTACCATTGGGATGTTTTACTGGTCTTAAAATTTGTTGTGGAATGGGAGGTCCATACAACTACAACGCATCAGCAAATTGTGGTGATTTAGGCGTGATTGCTTGTGATGATCCTTCTAAGCATATTGGGTGGGATGGTGTTCATTTGACTGAGGCTGCATATAGATTGATTGCTGAAGGTTTAATAAAGGACCATATTCTCTCCCTCAATTTAGTACCTTATGCTTTATGA 1038 0.4624 MCCCSEDCKCRPLGFLLGLPFAFLSLLISLVGVVVWIVGGGQHIPMRSVSEQRWIATVITFVIASSASLLAACPYTSIFSFGDSLADTGNLYLSSHHPPSDHCFFPPYGETYFHHVSGRCSDGRLIIDFIAESLGIPPVKPYMGIKNSGGWSVEGGANFAVIGATALDFSFFEERGIPIPTNYSLTAQLNWFRELLPALCNSSTNCHEVVGNSLFLIGEIGGNDFNYPLFLRKSVAEVKTYVPYVINAISSAINELIGLGARTLMVPGNLPLGCFTGLKICCGMGGPYNYNASANCGDLGVIACDDPSKHIGWDGVHLTEAAYRLIAEGLIKDHILSLNLVPYAL 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g0540 345 Pfam GDSL-like Lipase/Acylhydrolase 78 276 IPR001087 GO:0016788
Ssu1g0540 345 Gene3D SGNH hydrolase 64 277 IPR036514 -
Ssu1g0540 345 Gene3D SGNH hydrolase 278 334 IPR036514 -
Ssu1g0540 345 PANTHER - 278 335 - -
Ssu1g0540 345 PANTHER - 58 276 - -
Ssu1g0540 345 PANTHER ZINC FINGER FYVE DOMAIN CONTAINING PROTEIN 278 335 - -
Ssu1g0540 345 PANTHER ZINC FINGER FYVE DOMAIN CONTAINING PROTEIN 58 276 - -
Ssu1g0540 345 SUPERFAMILY SGNH hydrolase 78 331 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g0540 Ssu-Chr1 11952674 11974088 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g0540 61 274 Pollen Coat Proteome AT1G75930 27.397 1.55e-13 68.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g0540 - - gmx:100817404 411.379