Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g0536 ATGCAAACGATCAAAATCTCAGAGCGCACTCTCATCTTCCCTTCCCACCCTCCCTTCCTCCACGACCACCCCCTCCCTCTCTCCCACCTCGACATCGACCCCAACCTCCACCTCACCTTCCGCTACCTCCGCGCGTACGCCCCAACCTCCCTCGACCCCTTCCACGTCATCGCCTCCTCCCTCTCCCACGCGCTCCCCCACTTCTACCCCCTCGCCGGCGCGCTCCGCCGCCGCCACACCGACCCCCGCCGCCTCGAGCTCTGGTGCGCCGCCGGCCAGGGCGTCCCCCTCGTCCGCGCCGCCGCGGACTTCACCCTCGAGTCAGCGAACCACCTCGACGACCCGGCTTCTCCTTTCGCGGAGCACCTGGTGCCCGACCCGGGACCCGAGGAGGGGATGGAGCACCCGTGCGTGCTCCAGGTGACGGTATTCAAGTGCGGCGGGTTCGCGCTCGGCGCGGCGATGCACCACGCGCTGTGCGACGGGCTGGGCGGGACGCTGTTCTTCAATGCGGTGGCGGAGGTGGCGCGCGGGGCGACCCGGATAACGGTTGAGCCGGTTTGGGACCGAGAGAAGTTGTTGGGGCCCAGGGACCCGCCCCGGGTGGAGTCGGCGTTGATTGGGGAGTTTCTGCGGTTGGAGAAGGGGGTTTTGCCGTACCAACGGGATGTCGGTGGGGTCGCGAGAGAGTGCTTTCATGTGAAGGATGAGTGCTTGGACAAGTTCAAGAGGTCCTTGTTGGAGCAGTCTGCGTTGAACTTCACCGTTTTTGAGGCTCTTGGTGCCTACATTTGGAGGGCTAAGGTCCGGGCCTCGGGAATCCAGGCTCATGAGAAGGTTAAGTTTGCATACTCAATTAATATACGGAGACTAGTAAAGCCATCACTGCCTGCTGGCTATTGGGGTAATGGTTGCGTGCCAATGTATGTACAGCTGAGTGCCAAAGATTTGATCGAGAAACCCATTTGGGAAACTGCAGAGCTAATCAAAAAGAGTAAAAGTAATGTTACTGATGAGTATGTTCGGTCCTACATCGATTACCAGGAGCTGCATTTTGCTGATGGGATCACAGCGGGAAAAGAGGTGAGTGGGTTCACGGATTGGAGGCATTTGGGCCATTCAACTGTGGACTTTGGGTGGGGAGGCCCAGTTACTGTTTTGCCGCTTGGAAGGAACTTACTCGGGAGTGTTGAGCCTTGCTTCTTTTTGCCTTATTCAACAGCCGCTGCAGGGAAGAGGGAGGGGTTCAAGGTTTTGGTGAATTTGAGAGAGGCTGCGTTGCCTGCTTTCAGAGAAGACATGCAGGTGTTTTGCCAGTAG 1320 0.5902 MQTIKISERTLIFPSHPPFLHDHPLPLSHLDIDPNLHLTFRYLRAYAPTSLDPFHVIASSLSHALPHFYPLAGALRRRHTDPRRLELWCAAGQGVPLVRAAADFTLESANHLDDPASPFAEHLVPDPGPEEGMEHPCVLQVTVFKCGGFALGAAMHHALCDGLGGTLFFNAVAEVARGATRITVEPVWDREKLLGPRDPPRVESALIGEFLRLEKGVLPYQRDVGGVARECFHVKDECLDKFKRSLLEQSALNFTVFEALGAYIWRAKVRASGIQAHEKVKFAYSINIRRLVKPSLPAGYWGNGCVPMYVQLSAKDLIEKPIWETAELIKKSKSNVTDEYVRSYIDYQELHFADGITAGKEVSGFTDWRHLGHSTVDFGWGGPVTVLPLGRNLLGSVEPCFFLPYSTAAAGKREGFKVLVNLREAALPAFREDMQVFCQ 439
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g0536 439 Gene3D - 1 207 IPR023213 -
Ssu1g0536 439 PANTHER ACYL TRANSFERASE 4 3 437 - -
Ssu1g0536 439 Gene3D - 224 434 IPR023213 -
Ssu1g0536 439 Pfam Transferase family 4 435 - -
Ssu1g0536 439 PANTHER N-HYDROXYCINNAMOYL/BENZOYLTRANSFERASE, PUTATIVE-RELATED 3 437 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g0536 Ssu-Chr1 11893516 11896011 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g0536 4 390 Monolignol Biosynthesis Gene Families AT5G48930 29.529 3.62e-37 139
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g0536 - - gmx:100817021 771.155
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g0536 1 11893516 11896011 Ssu1g0536 1 11893516 11896011 ECH