Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g0526 ATGGGGTCTGAAGACAAACATAGTGAGCAGTCACTTGGTATAGGCCTTAAGGTCATGCTAGCAGCAgctttctctttatttgttaTGATCATATTAATCATCATCTTCcattttagtgtaaaatatatCATTAGACGCCAACAAAGGAGACGCCAAAACGACCTTCTTTATCAGATCCGCACTCAAATGGCACCAATTGATGCGAATTCTGTAGAGTCACGCAACTCTGGCCTTGACACTTTGATCATAGCCTCTCTGCCTAAACTCTTGTACAAGCAAACGGACCAGTTCAAGCAAGGTGAAGTTATAGAGTGCTCAGTTTGCTTAGGCACTATTGTGGAAGATGCAATTACTAGGGTACTACCAAATTGTAAGCACATTTTCATGTTGATTGTGTGGATAATGGTTAGTTCTAACACCACATGCCCAATTTGCCGCACTGTGGTCGAACCAAGGGTGCAACAAGAGCATGGTCATTTAGCCACACGGGTCCACCAAGTCAACCACAGCACCACGGTTGAGGGTGGTGATGAGCTACAAGATGGTTTGAATGGAGAAAGTGGGTGTTCAGTTTGA 576 0.4201 MGSEDKHSEQSLGIGLKVMLAAAFSLFVMIILIIIFHFSVKYIIRRQQRRRQNDLLYQIRTQMAPIDANSVESRNSGLDTLIIASLPKLLYKQTDQFKQGEVIECSVCLGTIVEDAITRVLPNCKHIFMLIVWIMVSSNTTCPICRTVVEPRVQQEHGHLATRVHQVNHSTTVEGGDELQDGLNGESGCSV 191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g0526 191 PANTHER RING-H2 FINGER PROTEIN ATL40-LIKE 1 181 - -
Ssu1g0526 191 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 65 152 IPR013083 -
Ssu1g0526 191 ProSiteProfiles Zinc finger RING-type profile. 105 146 IPR001841 -
Ssu1g0526 191 PANTHER RING FINGER DOMAIN-CONTAINING 1 181 - -
Ssu1g0526 191 SUPERFAMILY RING/U-box 85 152 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g0526 3 156 C3H Transcription Factor Family AT2G42360 32.919 1.14e-20 84.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g0526 K19038 - gmx:100786701 257.299
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g0526 1 11790606 11791181 Ssu1g0526 1 11790606 11791181 ECH