Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g0519 ATGAATTTTCATGTCCAAACTTCCAAAGCAGTTTCAAATCTTTTGCTTCGGCTTTCTCTAACAATCTCGCTTCTCCTGTTCAAGTGCCTTATATCAGCTCAGGTTGCTTACAGTTTCCAAAATGCAAGTGTTGGCGTGGTCATTGATGTCAATTCAGAGACGGGAAAACAACAGAAAAGAGCCATGCAAATTGCAGCTCAAAGtatcaataatatttcaaaGAATCACAACAACATAAACCTTTTCTTCCGCAACTCTGGTGGAATCCCATTACAAGCAGCTTCAGCGGCTGAAGAACTAATCATTAAGAAGAAAGTTGAAGTCGTAGTTGGCATGGGGACATGGCAAGAAGCAGCTCTAGTTGCTGACCTTGGAAACAAAGCTCAAATACCAATTATTTCATTTGCTTCTCCCCCAATAGTCCCTCCTTTAATGCAACATCGTTGGCCTTTTTTGATTCAAATGGCTAAAGATCAGGCTGCACACATGAACTGCATTGCAGATATTATCCATGCGTACAACTGGCAAAAGGTCATAGCTATATATGAAGACAACCCTTATAGTGGTGATTCTGGAATGTTAAGCCTCTTTTCTGAGGCTCTCCAAAAGGGTAACGCGCAGATTGAAAGCCGATTAGTTCTTCCACCACTCACTTCTTTATCTGATCCAAAAGCGGTTGTTCTTGATGAATTGCTTAAGCTGTTGCCTCTAAGTTCTCGTGTTTTTGTTGTGCTTAAAGCTTCATTCCCTATGGTAACCCATTTGTTCAGAGAAGCTAAGAAAATTGGATTCTTGGGGAAAGATTCAGCTTGGATAATCAATGAGGGGATCACAAGTATGTTGGACACTGCCAATAAATCTGTTTTATCCTCTATGGGAGGAACTTTGGGAATCAAAACCTACTATTCTACAAGTTCTTTTGCGTATACTCAGTTGCAGGAAGATTTCCAACGTGAGCATACTGAAACAGCAGGCTCTAAACCAGGATCAGATGCATTGCGAGCTTATGATAGTATTTCAATCATCACAAAGGCCTTGGAGGAAATGAATAGCAAAGCTAGTAACTCAAGGGTGTTCTTGGAGAAAATGTTATCTAGCAATTTCAAAGGTTTAAGTGGTGATATAAGATTCAAAGAAAGTCATCTATCCAACACTCCAGTATTGAGAGTCATAAACGTGGTTAATAAGGAATACAAGGAATTGGACTTTTGGACCCCAAAGTTGAAGTTTGCtagatctcttaaaatattgaaagacAGAGAGACAAGAGGTGATTATGCTACAAATAACTTAACTGGCCCAGTTGTTTGGCCAGGAGGCCTAATTTCTGCTGATCCCAAGGGATGGAAAATGCCTACAGATACAGAACCTTTAAAAGTGGCAATTCCTACAAACCctgcttttgataattttttgaagGTAGACTCCCAAAAGCAATATAGTGGTTTCTGTATTGATCTTTTCCTCGAGGCACGAAAAATTCTGAGTGACAGGTACTCTGGGATGCCTTATGAATTTGACCCCTTCAATGAATCCTACGATAAACTTATATTGAATGTCATAGACAAGTCCCATGATGCTATTGTAGGAGATGTAACAATACTTGCCAACCGATCAAAGGATGTGTGGTTCACTCAACCATACACTGAGTCAGGCTTATCAGTTATATTTCCAATAGAGACTGAAGGGTCATTATGGTTGTTTATGAAACCATTTAGCTGGGAAATGTGGATGGCAACTATTGGCATCCTCATCTACACAATGTTTATCATATGGTTCCTGGAGCATCACTTCAATCCAGATTTCGGTGGACCATTGAAAAATCAGATCAGCACCACACTTTGGTTTGCTTTTACTTCTCTATTTTTTGCTCATAGGGAGAGAATAAACAGCAACTCTGCACGAGTAGTAGTTGGAGTATGGCTATTTCTTGTGTTTGTTCTAACCTCAAGCTACACTGCCAACCTTTCTTCAATGCTTACTGTCAAACGATTAAAGTCTGGAAGAGATATTGAGTGGCTAAAGCAAAACAACTTACCAGTTGGTTGTGATAATAGCAGTTCCTTTATAAAGAGCTACATGATGAATGTGTACGATTTCCATCCGCAGCAAATAGTAGATGTTGATGGAGAACATGACATTGTGGATAAATTCAAAAGCAAAAGAATTTCGGCTCTCTTTCTTGAGAGCCCGTATGTGAAGGTTTTCTTGAATAAGTACTGCAATGATTACACTGCAATTACAGCTGCCTATAGATTTGGTGGACAGGGCTTTGTATTTCAAAAAGGATCTCCCATGGCAAGAGACTTTTCTGAAGCCATTTTAACGCTAGCAGAAAATGGAACACTAAAAAGTTTGGAAGAGAAATGGTTGACCCCTCCCAAGGAATGCTCAAACGGCTCAACGTCTTCAGAAACAGAGAGCCTGACCCTCAACAACTTTTGGAGTCTCTATATCATATGTGCAGCCATATCCACCATCTGCTTTGTGCGGGCCTTATTGACAAATTACTTGCATAACCATAACCATTACCATCCCAGAGAGGAAGCTCAACTTCAAGGCAATGTAACCGCTGATGATGATAGTGTTTGGAAGAAGGCAATTACAATTGGTACAGGTTTTTACAATAATGTGAATAACAAAACAATAGGTAGAGCTGCAACTTTTGGTGGAACACGTCGTCGGAATTCCTCAAGATGGGAGAATATAAGCACTTCTGATGATGTTGGTAATCCACAACGTTCTCTGTCAGCTGTCAATGATATGCTGTAG 2772 0.3936 MNFHVQTSKAVSNLLLRLSLTISLLLFKCLISAQVAYSFQNASVGVVIDVNSETGKQQKRAMQIAAQSINNISKNHNNINLFFRNSGGIPLQAASAAEELIIKKKVEVVVGMGTWQEAALVADLGNKAQIPIISFASPPIVPPLMQHRWPFLIQMAKDQAAHMNCIADIIHAYNWQKVIAIYEDNPYSGDSGMLSLFSEALQKGNAQIESRLVLPPLTSLSDPKAVVLDELLKLLPLSSRVFVVLKASFPMVTHLFREAKKIGFLGKDSAWIINEGITSMLDTANKSVLSSMGGTLGIKTYYSTSSFAYTQLQEDFQREHTETAGSKPGSDALRAYDSISIITKALEEMNSKASNSRVFLEKMLSSNFKGLSGDIRFKESHLSNTPVLRVINVVNKEYKELDFWTPKLKFARSLKILKDRETRGDYATNNLTGPVVWPGGLISADPKGWKMPTDTEPLKVAIPTNPAFDNFLKVDSQKQYSGFCIDLFLEARKILSDRYSGMPYEFDPFNESYDKLILNVIDKSHDAIVGDVTILANRSKDVWFTQPYTESGLSVIFPIETEGSLWLFMKPFSWEMWMATIGILIYTMFIIWFLEHHFNPDFGGPLKNQISTTLWFAFTSLFFAHRERINSNSARVVVGVWLFLVFVLTSSYTANLSSMLTVKRLKSGRDIEWLKQNNLPVGCDNSSSFIKSYMMNVYDFHPQQIVDVDGEHDIVDKFKSKRISALFLESPYVKVFLNKYCNDYTAITAAYRFGGQGFVFQKGSPMARDFSEAILTLAENGTLKSLEEKWLTPPKECSNGSTSSETESLTLNNFWSLYIICAAISTICFVRALLTNYLHNHNHYHPREEAQLQGNVTADDDSVWKKAITIGTGFYNNVNNKTIGRAATFGGTRRRNSSRWENISTSDDVGNPQRSLSAVNDML 923
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g0519 923 SUPERFAMILY Periplasmic binding protein-like I 44 405 IPR028082 -
Ssu1g0519 923 PANTHER GLUTAMATE RECEPTOR 2 919 - -
Ssu1g0519 923 SMART GluR_14 459 793 IPR001320 GO:0015276|GO:0016020
Ssu1g0519 923 Gene3D - 697 794 - -
Ssu1g0519 923 Gene3D - 453 565 - -
Ssu1g0519 923 Pfam Ligand-gated ion channel 793 822 IPR001320 GO:0015276|GO:0016020
Ssu1g0519 923 Pfam Receptor family ligand binding region 58 394 IPR001828 -
Ssu1g0519 923 Pfam Bacterial extracellular solute-binding proteins, family 3 471 792 IPR001638 -
Ssu1g0519 923 Gene3D - 52 385 - -
Ssu1g0519 923 CDD PBP1_GABAb_receptor_plant 43 414 IPR044440 -
Ssu1g0519 923 PIRSF IGluLR_plant 10 915 IPR017103 -
Ssu1g0519 923 SUPERFAMILY Periplasmic binding protein-like II 440 792 - -
Ssu1g0519 923 Gene3D - 566 696 - -
Ssu1g0519 923 Gene3D - 158 406 - -
Ssu1g0519 923 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 2 919 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g0519 Ssu-Chr1 11661888 11666368 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g0519 24 843 Ion Channels AT2G29120 31.761 2.40e-128 409
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g0519 - - gmx:100818078 1520.75
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g0519 1 11661888 11666368 Ssu1g0519 1 11661888 11666368 ECH