Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g0518 ATGACTTGgctcttcttttatttactcATCTCCCTTGCTCTCATTAATGGCAACCAAGATGAAGCGACAAATGTAGGCAACAAAGTTATATCCATTGGGGCAATCATTGATGTGAATTCTCGTGTTGGGAAAGAACAGCAAGTAGCCATGGACATTGCAGCTCAAAGTTACAATAGCAGTTCAAAGACCTACAAGTTGGCTCTCTATTTTCAGAACTCCACCAAGGATCCCCTCAGAGCCATCACTCTTGCTGAAGAGATGATTCATAAGCAAAATGTGCAAGTGATTATAGGGATGCACAGATGGCCAGAAGCAGCTCTAGTGGCTGAAATAGGAAGCCAAGCTCAAGTTCCTATCATAGCATTTGCAGAACCTACCATTACCCCACCACTGATGACAGGGCGATGGCCTTTTTTGGTGAGACTGGCTAACAGTGCCACAGCATATATAAAATGCGTTGCAGATATAGTGCAAACTTATAGTTGGCAAAGAGTAGTAGCCATCTACGAAGATGATGCATATGGTGGTGGAGATTATGGCATGCTAACACTGCTATATGAGGCCCTCCAGAATGTGGGTTCAACGATTGATTACCACTTAGCTCTGCCACCTATATCTTCTCTACATGATCCAGGAGAGCTTGTACGTGAGGAGCTGTCTAAGATGTTGCAAACACAATCTCGTGTGTTCATTGTGCTGCAATCTTCATTGGAAGTGGTGATTCATTTGTTTAAAGAAGCCTCAAAAATGGGACTTGTGGACAAAGAATCAGTTTGGATACTCCCAGAGAGCATAACTAATTTGCTGGACTCTGTCAACAAGTCTGCTATTTCCTATATGGATGGAGCTTTAGGAATCAAGACCTACTACTCCGAAATAAGCACCAAGTACCAAGACTTTGAGTCCAAGTTCCGGAGAACTTTTTGGCCTAAGAACGCCGAGGAAGATAACCGCTACCCTGGATTTTATGCTTTGCAAGCATATGACAGCATTAAAATTGTGACTCAAGCAGTAGACAGAATGACCAGTAGGAACACTAGCAGCCCAGCGAGTTTACTAAGAGAAATACTGTCTAGCAGTCTTCTTGGTTTAAGTGGTCAAATTCAATTTCAAGATGGGCTAGTCTTGCAGAATTCTATCTTGAGGATAGTAAATGTGGCTGGGAGGAGTTACAAGGAATTATGCTTTTGGAGTCAACAACATGGGTTCACAACAAACCTCCCTACAGGACAAGGTGTGTATGATGTTGCTGGTACTACAAAATGTTTCGGTGGTGTACGTTGGCCAGGGGATCTGAAGCAAGATCCAAAGGGCTGGAACATGCCAACTAAAACAAATCCATTGAAAATTGCAGTCCGAAGCAGAACCTCATTTTCCAAGTTTGTCAAGGTTGATTATGATCAGAATGGAAAACCATATAGTGGATTCTGCATTGATATTTTTCAGAGCGTGCTCGACCTTTTGGGGTATGATTTGCCATATAAGTATTTTCCCATTGATGGAACCTATAATGATTTGGTTCAGCTTGTCTATAACAAGACTTATGATGCTGTTGTTGGGGACATGACCATACTAGAGGAAAGATTGCAATATGTGGATTTTACAGTGCCATATGCAGAATCAGGATTGTCAATGATAGTTCCAGCAAAGTCTGAAGAGTCAGCATGGATGTTCACAAAGCCCTTTACCTTGGAACTGTGGATGGTTACAGGTGCCATTTTGATTTACACAATGTTAGCAGTTTGGTACCTTGAGAGAGAATCCAATCCAGAGTTTCACGGCAATTGGAAAAGCCAGATCAGCACAGATCTTTGGTTTACCTTCTCCTCTCTGTTCTTCGCTCACAGGGAAAAAATGCATAGCAACTTAACTCGCATGGTGATGGTCTCATGGCTTTTCCTAGTTCTGATCCTTACCTCATGCTACACTGCCAGTCTTTCTTCAATGCTCACAGTTAACAAACTGCAACCAAATGTCACAGACATTCAGTGGTTGAAGAGGAACAACATTAAAATTGGTTGTGATGGTGATTCATTTGTTAGGTCGTTCCTAGAGAAAGTAGAAAAGTTCAAGCCTGAGAACATCATCAATGTTACTAATGAATACAAGTACGATGatgcatttaaaaataacaGCATAGCAGCTGCCTTTCTTGAACTCCCATATGAAAAAGTATTCATTAATGAATACTGCAACAGATACACTGGTTCCACTCCCAGAACCAGATTTGGAGGATTGGGTTTTATGTTCCAGAAAGGCTCGCCAGTGGCCAGAGACGTGTCAAAAGCTATATTACATCTCTCAGAAAAAGCAGAGTTGAAGAGATTGGAAGAGAAGTGGTTGACACAGGACTGCTCCAACATGACCTCCAGCAGCACGGAAAGTTTGAAGCTCAGAAGTTTATGGATTCTATATGTCATCTCTGGTGCCACTTCCACCATTTGTCTTCTACTATCAACCATCCAGTGTCTACTAAAATTCCATCAGAAATGCCAAGACGTGGCACCGGAAGGCAATGACACACCAAGTGATCATAGTGTGTGGGAAAAGGTGATTACACGTGCAAAGCagatttttaacaaaaagatCAATAGTTCAAGTGAGGCACAGGATGTAACTGATTGTTCTTCGAGATGGGATCATGTGAGCATGATCGACTCCCCTAAGCATCAGCAGGAAATGGCTTCTCCGGCACCTGGAATTTCAATGCTCCCTTCTCCACCACCAGAGGTACAAATGACAACACATGATTTAGGAATCACCAACACTTCAAAGTAG 2778 0.4172 MTWLFFYLLISLALINGNQDEATNVGNKVISIGAIIDVNSRVGKEQQVAMDIAAQSYNSSSKTYKLALYFQNSTKDPLRAITLAEEMIHKQNVQVIIGMHRWPEAALVAEIGSQAQVPIIAFAEPTITPPLMTGRWPFLVRLANSATAYIKCVADIVQTYSWQRVVAIYEDDAYGGGDYGMLTLLYEALQNVGSTIDYHLALPPISSLHDPGELVREELSKMLQTQSRVFIVLQSSLEVVIHLFKEASKMGLVDKESVWILPESITNLLDSVNKSAISYMDGALGIKTYYSEISTKYQDFESKFRRTFWPKNAEEDNRYPGFYALQAYDSIKIVTQAVDRMTSRNTSSPASLLREILSSSLLGLSGQIQFQDGLVLQNSILRIVNVAGRSYKELCFWSQQHGFTTNLPTGQGVYDVAGTTKCFGGVRWPGDLKQDPKGWNMPTKTNPLKIAVRSRTSFSKFVKVDYDQNGKPYSGFCIDIFQSVLDLLGYDLPYKYFPIDGTYNDLVQLVYNKTYDAVVGDMTILEERLQYVDFTVPYAESGLSMIVPAKSEESAWMFTKPFTLELWMVTGAILIYTMLAVWYLERESNPEFHGNWKSQISTDLWFTFSSLFFAHREKMHSNLTRMVMVSWLFLVLILTSCYTASLSSMLTVNKLQPNVTDIQWLKRNNIKIGCDGDSFVRSFLEKVEKFKPENIINVTNEYKYDDAFKNNSIAAAFLELPYEKVFINEYCNRYTGSTPRTRFGGLGFMFQKGSPVARDVSKAILHLSEKAELKRLEEKWLTQDCSNMTSSSTESLKLRSLWILYVISGATSTICLLLSTIQCLLKFHQKCQDVAPEGNDTPSDHSVWEKVITRAKQIFNKKINSSSEAQDVTDCSSRWDHVSMIDSPKHQQEMASPAPGISMLPSPPPEVQMTTHDLGITNTSK 925
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g0518 925 Gene3D - 555 697 - -
Ssu1g0518 925 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 13 898 - -
Ssu1g0518 925 Gene3D - 725 787 - -
Ssu1g0518 925 Pfam Bacterial extracellular solute-binding proteins, family 3 467 782 IPR001638 -
Ssu1g0518 925 PANTHER GLUTAMATE RECEPTOR 3.4 13 898 - -
Ssu1g0518 925 Pfam Ligand-gated ion channel 783 809 IPR001320 GO:0015276|GO:0016020
Ssu1g0518 925 Pfam Receptor family ligand binding region 47 386 IPR001828 -
Ssu1g0518 925 SMART GluR_14 447 783 IPR001320 GO:0015276|GO:0016020
Ssu1g0518 925 PIRSF IGluLR_plant 1 903 IPR017103 -
Ssu1g0518 925 Gene3D - 326 449 - -
Ssu1g0518 925 CDD PBP1_GABAb_receptor_plant 31 407 IPR044440 -
Ssu1g0518 925 Gene3D - 146 319 - -
Ssu1g0518 925 SUPERFAMILY Periplasmic binding protein-like II 426 784 - -
Ssu1g0518 925 SUPERFAMILY Periplasmic binding protein-like I 27 439 IPR028082 -
Ssu1g0518 925 CDD GluR_Plant 446 781 - -
Ssu1g0518 925 Gene3D - 450 554 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g0518 Ssu-Chr1 11552530 11556992 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g0518 2 818 Ion Channels AT2G29120 32.632 7.43e-139 436
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g0518 - - gmx:100818619 1565.82