Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g0513 ATGGATATTCATAGTAATCATGGTGCAACTTCTGAAGGGATCCTTGAGAATGTTTGGGCCAAAATTATGAGCAGCGATGAAGCAGATGGGAGAAAAGGTGATGCAGCAGAATCTTCTAACTCTTGGGAGGAACTTCCTAATCTTGATAGAAGAGAAGGGTCCATGGAGATTCTACAAAGACTTCCAAGTTTAGGGAGGTGGATATCAATGGGAGCTGATTTCTGGGAAAAAGTTTTAGATGGTATTATTCTACCTAACACAAGCAACAAAGAAGAATCTAGCAATAACAATTTGGAAATTGGCAGTGCTAATGGATCTAATAACAGGGTAGAAGGTGGTGTGAGAATAGAGAAGGCAGTTACAAAACACTACAGGGGAGTTAGAAGAAGGCCATGGGGTAAATATGCTGCAGAGATTAGAGACTCATCCAAGAAAGGTGCTAGAGTTTGGCTTGGAACATTTGACACAGCTGAAGAAGCAGCTCTAGCTTATGACAAGGCTGCTTTGAGGATTAGGGGTCCAAAGGCATACCTTAATTTCCCACTTGAGAGGGTTGCAAATGCTTTAGGATGTGACCACAGAGGAACACATCTCACTTGCACATGCATAGGgaacaaagaaaaattgatcAACTCCCGGAAGAGAGGATCACGGGAAAGGGAAGTATTTGATGATATGATGAATGAACAACCTGCAACAAAAATGGTGGCGGGATTGGAATGCATGGTAGAAAATGAACTAGGTGTTTTTGTATTTCAGGACCTAGGAAGTGATTACTTGGACAGTTTGCTGTCTTCTTTTTGA 804 0.4092 MDIHSNHGATSEGILENVWAKIMSSDEADGRKGDAAESSNSWEELPNLDRREGSMEILQRLPSLGRWISMGADFWEKVLDGIILPNTSNKEESSNNNLEIGSANGSNNRVEGGVRIEKAVTKHYRGVRRRPWGKYAAEIRDSSKKGARVWLGTFDTAEEAALAYDKAALRIRGPKAYLNFPLERVANALGCDHRGTHLTCTCIGNKEKLINSRKRGSREREVFDDMMNEQPATKMVAGLECMVENELGVFVFQDLGSDYLDSLLSSF 267
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g0513 267 CDD AP2 122 181 IPR001471 GO:0003700|GO:0006355
Ssu1g0513 267 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF091 16 267 - -
Ssu1g0513 267 SMART rav1_2 123 187 IPR001471 GO:0003700|GO:0006355
Ssu1g0513 267 Gene3D AP2/ERF domain 122 183 IPR036955 GO:0003700|GO:0006355
Ssu1g0513 267 Pfam AP2 domain 123 173 IPR001471 GO:0003700|GO:0006355
Ssu1g0513 267 ProSiteProfiles AP2/ERF domain profile. 123 181 IPR001471 GO:0003700|GO:0006355
Ssu1g0513 267 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 16 267 - -
Ssu1g0513 267 SUPERFAMILY DNA-binding domain 123 182 IPR016177 GO:0003677
Ssu1g0513 267 PRINTS Ethylene responsive element binding protein signature 147 163 IPR001471 GO:0003700|GO:0006355
Ssu1g0513 267 PRINTS Ethylene responsive element binding protein signature 124 135 IPR001471 GO:0003700|GO:0006355
Ssu1g0513 267 MobiDBLite consensus disorder prediction 86 105 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g0513 Ssu-Chr1 11503461 11504264 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g0513 14 267 AP2-EREBP Transcription Factor Family AT4G18450 38.436 1.12e-49 164
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Ssu1g0513 AP2 3e-16 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g0513 - - gmx:100820226 439.113
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g0513 1 11503461 11504264 Ssu1g0513 1 11503461 11504264 ECH