Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g0512 ATGGCAATCCCTAAACCGAGCCCACCAAACAACAAAGAGGAAAGTAAGTCCACTCTTCCCCAAAATCCTTTCTTCTCTGCCACAAAATATTCTATGTCCCTACCTTTCCCCGTTCATTATTCCATAGAAATATGTCAAGTCCAAAACCACTTGACACAACCTCGCCAACTTGCCCTTCCTTCCTTCAAACccaaagagatagagagatacACAGAGCCCGACACAGAAAACACAAACATGGGAAGCAAGAAAACCTACGAGGAAGAAGGCGTGGTGTTGTTTTCCCAACCCCAAGCAGAGTTACCCTTCAACGAGAACGACCCACAGGACATGGTGTTATACCAAGTCCTGAACGAGGCCAATGCTCTCAGCAACACGTTTCTACCTCACCAGAGGCTCCACCAGCCCCAGCTGGGCCTCGAGCCCACCAGAAACATAGCCAAGAAGCACTACAGAGGGGTCCGGCGCCGCCCCTGGGGGAAGTACGCCGCTGAGATTCGCGACTCGGCGCGCCACGGCGCCAGAATATGGCTCGGCACCTTCCAAACCGCCGAAGAGGCCGCCATGGCTTACGACCGAGCCGCTTTCAAGATGAGGGGCGCCAAGGCTTTGCTCAATTTCCCAGCCGAAATTGTTGCGGCGGCGGAGCTatctttcaataataataataataatcacgaTGCTGTTTCTGAGTCCAGTGCTGGAAGCTCTTGCACGAATAGTTCCACTCAGGCACCTGGTTTTGAACATTGTTGCGGGATAGCTTGCAGAATGAGGCGGGAGAAATTTTCAAGTGGGAACTAG 804 0.4988 MAIPKPSPPNNKEESKSTLPQNPFFSATKYSMSLPFPVHYSIEICQVQNHLTQPRQLALPSFKPKEIERYTEPDTENTNMGSKKTYEEEGVVLFSQPQAELPFNENDPQDMVLYQVLNEANALSNTFLPHQRLHQPQLGLEPTRNIAKKHYRGVRRRPWGKYAAEIRDSARHGARIWLGTFQTAEEAAMAYDRAAFKMRGAKALLNFPAEIVAAAELSFNNNNNNHDAVSESSAGSSCTNSSTQAPGFEHCCGIACRMRREKFSSGN 267
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g0512 267 ProSiteProfiles AP2/ERF domain profile. 150 208 IPR001471 GO:0003700|GO:0006355
Ssu1g0512 267 Pfam AP2 domain 150 200 IPR001471 GO:0003700|GO:0006355
Ssu1g0512 267 Gene3D AP2/ERF domain 149 210 IPR036955 GO:0003700|GO:0006355
Ssu1g0512 267 CDD AP2 149 209 IPR001471 GO:0003700|GO:0006355
Ssu1g0512 267 MobiDBLite consensus disorder prediction 1 22 - -
Ssu1g0512 267 PRINTS Ethylene responsive element binding protein signature 174 190 IPR001471 GO:0003700|GO:0006355
Ssu1g0512 267 PRINTS Ethylene responsive element binding protein signature 151 162 IPR001471 GO:0003700|GO:0006355
Ssu1g0512 267 PANTHER PATHOGENESIS-RELATED GENES TRANSCRIPTIONAL ACTIVATOR PTI5 79 224 - -
Ssu1g0512 267 SUPERFAMILY DNA-binding domain 150 210 IPR016177 GO:0003677
Ssu1g0512 267 PANTHER DNA-BINDING DOMAIN 79 224 IPR044808 GO:0003700|GO:0009873
Ssu1g0512 267 SMART rav1_2 150 214 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g0512 Ssu-Chr1 11496328 11499922 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g0512 101 250 AP2-EREBP Transcription Factor Family AT3G23240 43.871 5.91e-38 131
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Ssu1g0512 AP2 1.2e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g0512 K13433 - gmx:100811533 269.24
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g0512 1 11496328 11499922 Ssu1g0512 1 11496328 11499922 ECH