Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g0510 atggCTTCTTCTAATAGACACTGGCCAAGCATGTTCAAGTCTAAGCCCTGCAACCCTCACCACCAATGGCAGCATGACATCAACTCCTCCCTCATCTCAACCGGTTGCCACAGAAGCCCTTACACTTCAGGAGCGGGTTGTGAGGAGAGAAGTCCAGAGCCAAAGCCAAGGTGGAACCCAAAACCTGAGCAAATTCGCATTCTGGAGGCTATATTCAACTCTGGAATGGTGAATCCTCCCAGGGATGAGATAAGGAAGATAAGGGCACAGTTGCAAGAGTATGGCCAAGTGGGTGATGCAAATGTCTTCTATTGGTTCCAGAACCGCAAATCAAGGAGCAAGCACAAGCTTCGCCATCTCCAAAACTCAAAGAACCATAACCTTGAACCCCAACACAACCCCACTTCTCTCCCTCAAGTCACTGCACCCTCATCCTCATCTTCCTCCTCTGAGAAATCTTCCCCAAAGGAAATACTACCCACCAAGGTATTCTCCATTGGTTTCTCTAACGTGACCGATGTGGTGCCTAATTCTCCGACTGCTTCTGTGAACCAGACCTATTTTCAAACCCACAATGAGTCCACTCTGCTTCCACCACCTGCTGCTGCTGCACCAGTTGAGGCTTTCTTCTTCCCAGTGCAACATCATGGGCATGGAGAAGCACCTAGCACTGTGACATCACAAGGGTTTTGCTTCTCTGAGCTGTCCAATGTTGTTCAAGCCCAATCACATGCTCAACATAATGTTGGTCCTTGCACTAGCCTTTTGCTTAGTGAGATCGTTAGCCATGGTGCTGCTGGCTCAAAGAAAGATCTACAACAAGACAAGTCTCTGAAAATAATGCACCAGCCCCCACTGCTTAATTTCTGTGTCACTCCCACAACAACAGCTCCTATTACTACCACTGTTGTACCTCCCATCACTACCTCCACCACTACTGTTCTATCCCCCATCATTGCTCAAGTTCAAGGTAATTTaagttag 984 0.4746 MASSNRHWPSMFKSKPCNPHHQWQHDINSSLISTGCHRSPYTSGAGCEERSPEPKPRWNPKPEQIRILEAIFNSGMVNPPRDEIRKIRAQLQEYGQVGDANVFYWFQNRKSRSKHKLRHLQNSKNHNLEPQHNPTSLPQVTAPSSSSSSSEKSSPKEILPTKVFSIGFSNVTDVVPNSPTASVNQTYFQTHNESTLLPPPAAAAPVEAFFFPVQHHGHGEAPSTVTSQGFCFSELSNVVQAQSHAQHNVGPCTSLLLSEIVSHGAAGSKKDLQQDKSLKIMHQPPLLNFCVTPTTTAPITTTVVPPITTSTTTVLSPIIAQVQGNLS 327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g0510 327 MobiDBLite consensus disorder prediction 39 62 - -
Ssu1g0510 327 ProSiteProfiles 'Homeobox' domain profile. 51 116 IPR001356 GO:0003677
Ssu1g0510 327 MobiDBLite consensus disorder prediction 124 156 - -
Ssu1g0510 327 SUPERFAMILY Homeodomain-like 51 119 IPR009057 -
Ssu1g0510 327 Pfam Homeodomain 55 115 IPR001356 GO:0003677
Ssu1g0510 327 PANTHER WUSCHEL-RELATED HOMEOBOX 9 1 324 IPR044557 GO:0003700|GO:0050793
Ssu1g0510 327 CDD homeodomain 54 116 IPR001356 GO:0003677
Ssu1g0510 327 Gene3D - 55 121 - -
Ssu1g0510 327 SMART HOX_1 53 120 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g0510 Ssu-Chr1 11430806 11432100 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g0510 1 126 Wox Gene Family AT2G33880 82.812 4.78e-67 213
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Ssu1g0510 Homeodomain 9e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g0510 - - mtr:MTR_2g015000 444.506
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g0510 1 11430806 11432100 Ssu1g0510 1 11430806 11432100 ECH